Bioconductor Qiime

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823

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deseq2 R fedora qiime

updated 5.7 years ago by Michael Love 41k • written 5.7 years ago by kperlejewski • 0

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1.4k

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deseq2 R microbiome phyloseq qiime

updated 6.4 years ago by Michael Love 41k • written 6.4 years ago by ssingh59 • 0

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replies

996

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deseq2 qiime

updated 6.6 years ago by Michael Love 41k • written 6.6 years ago by syafiqkamarulazman • 0

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2.3k

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R qiime

updated 7.1 years ago by James W. MacDonald 65k • written 7.1 years ago by trichter • 0

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1.9k

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biom json hdf5 qiime phyloseq

updated 7.5 years ago by Bernd Fischer ▴ 550 • written 7.5 years ago by newmanss • 0

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1.6k

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metagenomeseq qiime biom

updated 7.7 years ago by Joseph Nathaniel Paulson ▴ 280 • written 7.7 years ago by dr.richrodrigues • 0

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20k

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r phyloseq import_biom otu qiime

updated 8.5 years ago by mcmurdie ▴ 20 • written 8.5 years ago by moanam • 0

7 results • Page 1 of 1

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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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