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qiime
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Error in file(con, “r”) : cannot open the connection
r
phyloseq
import_biom
otu
qiime
updated 8.6 years ago by
mcmurdie
▴ 20 • written 8.6 years ago by
moanam
• 0
1
vote
2
replies
1.0k
views
QIIME Differential abundance on multiple studies
deseq2
qiime
updated 6.6 years ago by
Michael Love
41k • written 6.6 years ago by
syafiqkamarulazman
• 0
0
votes
1
reply
1.9k
views
phyloseq biom json format conversion needed to hdf5 format for qiime
biom
json
hdf5
qiime
phyloseq
updated 7.5 years ago by
Bernd Fischer
▴ 550 • written 7.5 years ago by
newmanss
• 0
1
vote
1
reply
1.4k
views
Getting OTUID rather than Taxonomy from Results function in DESeq2
deseq2
R
microbiome
phyloseq
qiime
updated 6.4 years ago by
Michael Love
41k • written 6.4 years ago by
ssingh59
• 0
0
votes
1
reply
829
views
DESeq2 intstallation error on fedora
deseq2
R
fedora
qiime
updated 5.8 years ago by
Michael Love
41k • written 5.8 years ago by
kperlejewski
• 0
1
vote
1
reply
2.3k
views
QIIME, R and bioconducter
R
qiime
updated 7.1 years ago by
James W. MacDonald
65k • written 7.1 years ago by
trichter
• 0
2
votes
1
reply
1.6k
views
Metagenome seq errors using biom (1.3) file
metagenomeseq
qiime
biom
updated 7.7 years ago by
Joseph Nathaniel Paulson
▴ 280 • written 7.8 years ago by
dr.richrodrigues
• 0
7 results • Page
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Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…
Answer: Handling multiple differential expression comparisons
by
Michael Love
41k
It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…
Comment: Too many significant genes when integrating gtex and tcga
by
ATpoint
★ 4.1k
These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…
Votes
package goseq seems to be not available on the latest version of R
package goseq seems to be not available on the latest version of R
Print Differentially Expressed Exons From Dexseq Results
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
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