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First principal component variance stabilised RNA-seq data correlates with total read counts per sample / library concentration
RNA-seq
PCA
control
DESeq2
Quality
2.2 years ago • updated 2.0 years ago
9906201a
▴ 20
0
votes
3
replies
2.2k
views
what does "mean base quality" mean?
base quality
quality
mean base quality
updated 7.6 years ago by
Mike Smith
★ 6.5k • written 7.6 years ago by
christiangriffioen
• 0
0
votes
1
reply
857
views
Array quality metrics for large sample size
microarray
quality
updated 5.3 years ago by
Wolfgang Huber
★ 13k • written 5.3 years ago by
RV
▴ 10
0
votes
0
replies
611
views
AffyExpress choose relative path folder
folder
quality
QualityControl
AffyExpress
3.4 years ago
bastien_chassagnol
• 0
4 results • Page
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Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Dylan.Sheerin
• 0
Thank you very much, Gordon. I'll give voomLmFit a go! And for comparisons between the cohorts I presume duplicateCorrelation with standar…
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Gordon Smyth
50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Comment: Log-cpm values from limma
by
Gordon Smyth
50k
No, it does not mean that. `voom()` uses the design matrix, including the W covariates, to compute precision weights but not to adjust the …
Comment: Extremely small p-values using Limma for proteomic data
by
Abbey
• 0
This is the code. The only part I changed was adding the contrasts.fit as you suggested. Thanks for taking a look! ``` # Load necessary …
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
Probably. I would not expect such large fold changes. But without seeing your code, who knows?
Votes
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
Bioconductor 3.19 is Released!
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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