Bioconductor Quantification

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RNASeq Rsubread featureCounts Quantification

updated 10 months ago by Gordon Smyth 48k • written 10 months ago by Sara • 0

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1.3k

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Subread RNASeq featureCounts quantification

updated 12 months ago by Gordon Smyth 48k • written 12 months ago by Sara • 0

1

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4

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969

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gene isoform quantification rna-seq

updated 4.3 years ago by swbarnes2 ★ 1.3k • written 4.3 years ago by angel.campos • 0

3 results • Page 1 of 1

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Answer: Obtaining rsIDs with ENSG and variant ID information by Robert Castelo ★ 3.0k

You should first and foremost find out what was the human reference genome version from which your dataset was derived. Assuming this was G…

Comment: DESeq2 - groups with biological replicates from the same patient by James W. MacDonald 64k

If by clustering you mean there might be a within-subject correlation, then yes it's a possibility. But you cannot control for that using a…

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Mike Smith ★ 6.2k

If we hover over the tiny little red icon next to the Linux build report, we can see that the source package isn't being distributed becaus…

Comment: ClusterProfiler - enrichKEGG on specific pathways by EvaLan • 0

Hey bekah, I wonder if you have found the solution to solve this issue? Best wishes, EvaLan

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Gordon Smyth 48k

That's a good question. On the DMRcate landing page, one can see that the "Source package" file is missing, meaning that installation in Un…

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