Bioconductor Isoform

Showing : isoform • reset

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3.8k

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limma isoform edgeR salmon R

updated 14 months ago by ATpoint ★ 5.0k • written 14 months ago by mohammedtoufiq91 ▴ 10

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823

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Isoform IsoformSwitchAnalyzeR

2.8 years ago Craig • 0

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1.2k

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pacbio isoform

written 3.2 years ago by lhaiyan3 • 0

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3.5k

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RNASeqData isoform DESeq2

3.8 years ago • updated 3.7 years ago priyanka.m • 0

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2.1k

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isoform RNA-seq hisat2 stringtie ballgown

5.4 years ago ra711 • 0

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2.1k

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isoform deep sequencing voom

updated 5.5 years ago by Gordon Smyth 53k • written 5.5 years ago by Ina Hoeschele ▴ 620

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1.9k

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tximport isoform voom

updated 5.6 years ago by Gordon Smyth 53k • written 5.6 years ago by Ina Hoeschele ▴ 620

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2.1k

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cancer Isoform limma IsoformSwitchAnalyzeR

updated 6.4 years ago by k.vitting.seerup ▴ 120 • written 6.4 years ago by asmita • 0

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1.7k

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gene isoform quantification rna-seq

updated 6.5 years ago by swbarnes2 ★ 1.4k • written 6.5 years ago by angel.campos • 0

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2.0k

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isoformswitchanalyzer isoform differential isoform usage

written 7.2 years ago by A ▴ 60

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1.3k

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kallisto differential isoform usage isoform

8.3 years ago ilyco • 0

11 results • Page 1 of 1

Recent ...

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Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Erik Wright ▴ 160

This has to do with the fact that some taxonomies reuse names at the same rank level. Common examples in the SILVA taxonomy are "Incertae S…

Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?) by a2a2ddrhaa • 0

For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…

Votes

Answer: Subsetting data verses contrasts [DESeq2]?

A: WGCNA differences two groups 10 replicates each group

A: WGCNA sample size minimum: why?

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name

Answer: Can you colour dendrogram branch clusters in pheatmap?

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Popular Question to Peter Hickey ▴ 760