Bioconductor Isoform

Showing : isoform • reset

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245

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Isoform IsoformSwitchAnalyzeR

6 months ago Craig • 0

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421

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pacbio isoform

written 12 months ago by lhaiyan3 • 0

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1.9k

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RNASeqData isoform DESeq2

19 months ago • updated 18 months ago priyanka.m • 0

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1.1k

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isoform RNA-seq hisat2 stringtie ballgown

3.2 years ago ra711 • 0

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1.0k

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isoform deep sequencing voom

updated 3.3 years ago by Gordon Smyth 48k • written 3.3 years ago by Ina Hoeschele ▴ 620

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878

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tximport isoform voom

updated 3.4 years ago by Gordon Smyth 48k • written 3.4 years ago by Ina Hoeschele ▴ 620

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1.1k

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cancer Isoform limma IsoformSwitchAnalyzeR

updated 4.2 years ago by k.vitting.seerup ▴ 120 • written 4.2 years ago by asmita • 0

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973

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gene isoform quantification rna-seq

updated 4.3 years ago by swbarnes2 ★ 1.3k • written 4.3 years ago by angel.campos • 0

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1.0k

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isoformswitchanalyzer isoform differential isoform usage

written 5.0 years ago by A ▴ 40

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836

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kallisto differential isoform usage isoform

6.1 years ago ilyco • 0

10 results • Page 1 of 1

Recent ...

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Answer: RNASeq time course analysis, missing time points for control by Gordon Smyth 48k

You could fit a spline trend with design matrix `treatment+spline`. Then it won't matter than the control and treatment times don't match u…

Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0

Thanks James for your helpful response. This particular experimental set up is very common in iPSC studies, where multiple differentiations…

Comment: DESeq2 test for synergistic vs additive effects by Jay • 0

Why is TrtAB - TrtA - TrtB + Control "not really a thing"? i came to this forum answer when attempting to use EdgeR to answer a similar que…

Comment: NCBI protein conversion to CDNA and NCBI gene (in R) by Gordon Smyth 48k

Continuation of https://support.bioconductor.org/p/9155428/

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Tim Peters ▴ 150

Thanks Daniel, Gordon and Lori for flagging this. DSS is only needed for the vignette so I'll remove that section, plus the dependency, som…

Votes

Answer: Confused about the CPM and TMM normalization in edgeR

Answer: Differential gene expression analysis

Comment: Why is DMRcate not available for Bioconductor version 3.18?

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