Bioconductor Isoform

Showing : isoform • reset

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464

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Isoform IsoformSwitchAnalyzeR

17 months ago Craig • 0

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761

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pacbio isoform

written 22 months ago by lhaiyan3 • 0

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2.6k

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RNASeqData isoform DESeq2

2.5 years ago • updated 2.4 years ago priyanka.m • 0

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1.5k

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isoform RNA-seq hisat2 stringtie ballgown

4.0 years ago ra711 • 0

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1.5k

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isoform deep sequencing voom

updated 4.2 years ago by Gordon Smyth 51k • written 4.2 years ago by Ina Hoeschele ▴ 620

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1.2k

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tximport isoform voom

updated 4.3 years ago by Gordon Smyth 51k • written 4.3 years ago by Ina Hoeschele ▴ 620

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1.4k

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cancer Isoform limma IsoformSwitchAnalyzeR

updated 5.0 years ago by k.vitting.seerup ▴ 120 • written 5.0 years ago by asmita • 0

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1.3k

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gene isoform quantification rna-seq

updated 5.1 years ago by swbarnes2 ★ 1.4k • written 5.1 years ago by angel.campos • 0

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1.4k

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isoformswitchanalyzer isoform differential isoform usage

written 5.9 years ago by A ▴ 40

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1.1k

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kallisto differential isoform usage isoform

7.0 years ago ilyco • 0

10 results • Page 1 of 1

Recent ...

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Comment: Mostly increased counts in differentially accessible peaks using DESeq2 by Ricardo Iván • 0

Hi Michael, Thanks for your reply. After reviewing the PCAs, maybe the issue that despite the replicates looking similar, there is still a…

Comment: Using Normalized Counts in DESeq2 by Michael Love 42k

Also, just to add, there are many dozens of posts on this topic of DESeq2 applied to TCGA counts, normalized or other. Recommend google sea…

Answer: Using Normalized Counts in DESeq2 by ATpoint ★ 4.5k

TCGA raw counts can be obtained for example using the TCGAbiolinks or recount packages.

Comment: How to reverse complement some elements of a DNAStringSet by Christine Jones • 0

Fantastic, thank you

Comment: When running contrasts, does it use normalized read counts? by Katherine • 0

Ok, so the comment I was given where they said DeSeq2 should be with normalized counts is incorrect. the ```normalized_counts``` variable …

Votes

Answer: When running contrasts, does it use normalized read counts?

Comment: featureCounts fails to load annotation file

Answer: How to reverse complement some elements of a DNAStringSet

Answer: KEGGgraph result difference

Answer: What should be the normalization protocol for RNA seq data for WGCNA?

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