Showing : isoform • reset
6
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10
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3.0k
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What type of counts data to import for performing Isoform analysis in edgeR
limma isoform edgeR salmon R
updated 5 months ago by ★ 4.8k • written 5 months ago by ▴ 10
0
votes
0
replies
619
views
IsoformSwitchAnalyzer
Isoform IsoformSwitchAnalyzeR
2.0 years ago Craig • 0
0
votes
2
replies
941
views
Does the knock down cause transcriptome-wide differences in isoform usage for Pac-Bio data?
pacbio isoform
written 2.5 years ago by • 0
0
votes
5
replies
3.0k
views
Can Differential Isoform expression analysis can be performed using DESeq2 package
RNASeqData isoform DESeq2
3.1 years ago • updated 3.0 years ago priyanka.m • 0
0
votes
0
replies
1.8k
views
HISAT2/StringTie/Ballgown for Novel Transcript Isoform Differential Expression
isoform RNA-seq hisat2 stringtie ballgown
4.6 years ago ra711 • 0
0
votes
5
replies
1.8k
views
isoform data, deep sequencing and voom
isoform deep sequencing voom
updated 4.8 years ago by 52k • written 4.8 years ago by ▴ 620
0
votes
4
replies
1.5k
views
mean-variance trend plots with isoform and gene-level data from tximport
tximport isoform voom
updated 4.8 years ago by 52k • written 4.8 years ago by ▴ 620
1
vote
4
replies
1.7k
views
Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer Isoform limma IsoformSwitchAnalyzeR
updated 5.6 years ago by ▴ 120 • written 5.6 years ago by • 0
1
vote
4
replies
1.5k
views
gene Isoforms quantification using RNA-seq data
gene isoform quantification rna-seq
updated 5.7 years ago by ★ 1.4k • written 5.7 years ago by • 0
1
vote
5
replies
1.6k
views
Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
isoformswitchanalyzer isoform differential isoform usage
written 6.5 years ago by ▴ 60
0
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0
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1.2k
views
IsoformSwitchAnalyzeR error input
kallisto differential isoform usage isoform
7.6 years ago ilyco • 0
11 results • Page 1 of 1
Recent ...
Replies
Answer: Limma suqeezeVar by Gordon Smyth 52k
I am not quite clear why you're not using the limma package directly, because it will compute all the variances and the df automatically fo…
Comment: Discrepancies in normalised count data vs unnormalised by swbarnes2 ★ 1.4k
Well, that's going to make each sample normalize quite differently. So you should expect large difference between normalized and unnormali…
Comment: Can't install BioC packages (and manager) behind firewall by Marcel Ramos 700
Hi Delphine, Please make sure that your SSL certificates are up to date. Check with your system's administrator. Your browser may be usin…
Comment: Limma trend with limpa by Alejandro • 0
Dear Gordon, Thank you very much!
Answer: DESeq2 from phyloseq error by asafpr • 0
Apparently, I left this line: ```r setClassUnion("ExpData", c("matrix", "SummarizedExperiment")) ``` to patch the ExpData issue which was …
Votes
Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
Comment: Check removeBatchEffect effectiveness
Answer: Check removeBatchEffect effectiveness
A: what should I do with many zero counts from Salmon quantification
Comment: parameters of filterByExpr
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