Bioconductor Quantsmooth

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quantsmooth

updated 10.9 years ago by Jan Oosting ▴ 20 • written 11.0 years ago by bob.stephens.2005 • 0

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quantsmooth quantsmooth

13.9 years ago Srinivas Srikanth ▴ 70

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ideogram quantsmooth GenomeGraphs ideogram quantsmooth GenomeGraphs

14.1 years ago Pete Shepard ▴ 240

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Clustering annotate quantsmooth Clustering annotate quantsmooth

updated 14.4 years ago by Oosting, J. PATH ▴ 550 • written 14.4 years ago by Nandini B ▴ 30

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 17.9 years ago by Matt Ritchie ▴ 460 • written 17.9 years ago by Elizabeth McClellan ▴ 10

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Biobase annotate affy affyio beadarray quantsmooth beadarraySNP lumi Biobase annotate

18.1 years ago Johnstone, Alice ▴ 410

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 18.1 years ago by Mark Dunning ▴ 320 • written 18.1 years ago by Krys Kelly ▴ 270

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1.7k

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 18.1 years ago by Mark Dunning ▴ 320 • written 18.1 years ago by Johnstone, Alice ▴ 410

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 18.1 years ago by Mike Smith ▴ 40 • written 18.1 years ago by Krys Kelly ▴ 270

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Microarray Annotation geneplotter affy affyio beadarray quantsmooth beadarraySNP affy

updated 18.2 years ago by Matt Ritchie ▴ 460 • written 18.2 years ago by Keith James ▴ 10

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Comment: 3-factor DESeq2 trime-series analysis by swbarnes2 ★ 1.4k

What does your PCA look like? A lot of times, I find that different cell lines are so different from each other, that they should not be d…

Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by yongjie.wang • 0

Thanks for your reply. " normFactors <- exp(-1 * offst(set2)) normFactors <- normFactors / exp(rowMeans(log(normFactors))) normalizat…

Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I'm not familiar with this usage, or code here ``` normFactors <- exp(-1 * offst(set2)) ``` In the RNA-seq gene-level workflow, we …

Answer: Which of apeglm and ashr may be more appropriate for pseudobulked DESeq2 analysi by Michael Love 43k

> apeglm appears much more aggressive in shrinkage, pushing many genes toward logFC = 0 > ashr maintains a gradient of shrinkage val…

Comment: voomLmFit fitted log-CPM values by Gordon Smyth 53k

The fitted values are on the log2CPM scale. I would have told you if they were not! I think you may be getting confused by the differences…

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Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

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How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

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Popular Question to Assa Yeroslaviz ★ 1.5k