Bioconductor Quantsmooth

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quantsmooth

updated 11.1 years ago by Jan Oosting ▴ 20 • written 11.1 years ago by bob.stephens.2005 • 0

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1.2k

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quantsmooth quantsmooth

14.1 years ago Srinivas Srikanth ▴ 70

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1.2k

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ideogram quantsmooth GenomeGraphs ideogram quantsmooth GenomeGraphs

14.3 years ago Pete Shepard ▴ 240

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1.6k

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Clustering annotate quantsmooth Clustering annotate quantsmooth

updated 14.5 years ago by Oosting, J. PATH ▴ 550 • written 14.5 years ago by Nandini B ▴ 30

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1.7k

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 18.0 years ago by Matt Ritchie ▴ 460 • written 18.0 years ago by Elizabeth McClellan ▴ 10

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1.2k

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Biobase annotate affy affyio beadarray quantsmooth beadarraySNP lumi Biobase annotate

18.2 years ago Johnstone, Alice ▴ 410

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1.5k

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 18.2 years ago by Mark Dunning ▴ 320 • written 18.2 years ago by Krys Kelly ▴ 270

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1.7k

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 18.2 years ago by Mark Dunning ▴ 320 • written 18.2 years ago by Johnstone, Alice ▴ 410

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1.9k

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 18.3 years ago by Mike Smith ▴ 40 • written 18.3 years ago by Krys Kelly ▴ 270

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1.5k

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Microarray Annotation geneplotter affy affyio beadarray quantsmooth beadarraySNP affy

updated 18.4 years ago by Matt Ritchie ▴ 460 • written 18.4 years ago by Keith James ▴ 10

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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