Bioconductor Quantsmooth

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quantsmooth

updated 10.3 years ago by Jan Oosting ▴ 20 • written 10.3 years ago by bob.stephens.2005 • 0

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quantsmooth quantsmooth

13.3 years ago Srinivas Srikanth ▴ 70

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ideogram quantsmooth GenomeGraphs ideogram quantsmooth GenomeGraphs

13.5 years ago Pete Shepard ▴ 240

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1.4k

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Clustering annotate quantsmooth Clustering annotate quantsmooth

updated 13.8 years ago by Oosting, J. PATH ▴ 550 • written 13.8 years ago by Nandini B ▴ 30

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1.5k

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 17.2 years ago by Matt Ritchie ▴ 460 • written 17.3 years ago by Elizabeth McClellan ▴ 10

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1.1k

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Biobase annotate affy affyio beadarray quantsmooth beadarraySNP lumi Biobase annotate

17.5 years ago Johnstone, Alice ▴ 410

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1.4k

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 17.5 years ago by Mark Dunning ▴ 320 • written 17.5 years ago by Krys Kelly ▴ 270

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1.5k

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 17.5 years ago by Mark Dunning ▴ 320 • written 17.5 years ago by Johnstone, Alice ▴ 410

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1.8k

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 17.5 years ago by Mike Smith ▴ 40 • written 17.5 years ago by Krys Kelly ▴ 270

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1.3k

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Microarray Annotation geneplotter affy affyio beadarray quantsmooth beadarraySNP affy

updated 17.6 years ago by Matt Ritchie ▴ 460 • written 17.6 years ago by Keith James ▴ 10

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Answer: Curiously shaped volcano plot with using oarfish + swish to do differential gene by Michael Love 43k

See swish vignette, these are explained.

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

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Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

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