Bioconductor R3Cseq

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r3cseq bam trimmed

4.1 years ago ch_el ▴ 10

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1.0k

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r3Cseq

updated 7.0 years ago by izzy.yichao.cai ▴ 10 • written 8.3 years ago by manduchi ▴ 10

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832

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4Cseq r3cseq

7.9 years ago tlgolan • 0

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957

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r3cseq 4c

8.9 years ago Theo ▴ 10

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822

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r3Cseq

9.1 years ago felix.klein ▴ 150

5 results • Page 1 of 1

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Comment: Trouble reading samplesheet in with diffbind to create dba by Mallory • 0

Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …

Answer: Trouble reading samplesheet in with diffbind to create dba by Anthony • 0

I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …

Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100

Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz

Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k

The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …

Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k

You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.

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Answer: How to do DESeq2 on Kallisto Data

Comment: Most enriched pathway is not expressed when modifying universe parameter

Time-course, comparison of two groups

Answer: Behaviour of featureCounts when quantifying multi-mapping reads

Answer: GESA with certain gene list returns no result with human genom, but many result

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Popular Question to Dan Tenenbaum ★ 8.2k