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ramigo
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reset
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read tree fails for large trees
RamiGO
R
gene ontology
igraph
9.8 years ago
bkellman
• 0
0
votes
1
reply
1.3k
views
Empty annotation of DOT objects with readAmigoDot() (no annot or leaves)
ramigo
annotation
readAmigoDot
getAmigoTree
10.5 years ago
evepash
• 0
0
votes
0
replies
1.1k
views
RamiGO: getAmigoTree producing internal server errors
ramigo
10.6 years ago
Asta Laiho
▴ 120
0
votes
1
reply
1.4k
views
RamiGO package function getAmigoTree broken
GO
RamiGO
GO
RamiGO
updated 11.6 years ago by
Dan Tenenbaum
★ 8.2k • written 11.7 years ago by
Asta Laiho
▴ 120
0
votes
2
replies
1.8k
views
Error in getAmigoTree (RamiGO package)
RamiGO
RamiGO
updated 11.7 years ago by
Dan Tenenbaum
★ 8.2k • written 11.7 years ago by
suzy.stiegelmeyer@syngenta.com
▴ 40
0
votes
0
replies
1.4k
views
question about RamiGO adjM2gml
GO
RamiGO
GO
RamiGO
13.4 years ago
Guest User
★ 13k
6 results • Page
1 of 1
Recent ...
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Comment: Large logFC but somewhat high FDR
by
Gordon Smyth
53k
I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```
Answer: p.adjust BH Question
by
Gordon Smyth
53k
Duplicate of https://support.bioconductor.org/p/41077/
Answer: Large logFC but somewhat high FDR
by
Gordon Smyth
53k
Glad you're getting good use out of the package. The results that you show seem pretty much as one would expect, with nothing surprising. …
Comment: After running samtools, the featureCounts command crashed.
by
MarcHintz99
• 0
Thanks for shairng https://subread.sourceforge.net/
Comment: Senior Teaching Fellow (MSc Computational Biomedicine)
by
eja.ger.m
• 0
Opportunities like this remind me how digital learning is evolving, much like modern mobile games. With programmes becoming fully online an…
Votes
Comment: upstream git branches of bioc-release
A: p.adjust BH generates duplicate values
Answer: gene Set with high AUC score but no cells assigned to cell type
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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