Showing : ramigo • reset
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read tree fails for large trees
RamiGO R gene ontology igraph
8.8 years ago bkellman • 0
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Empty annotation of DOT objects with readAmigoDot() (no annot or leaves)
ramigo annotation readAmigoDot getAmigoTree
9.5 years ago evepash • 0
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RamiGO: getAmigoTree producing internal server errors
ramigo
9.6 years ago Asta Laiho ▴ 120
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RamiGO package function getAmigoTree broken
GO RamiGO GO RamiGO
updated 10.7 years ago by ★ 8.2k • written 10.7 years ago by ▴ 120
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Error in getAmigoTree (RamiGO package)
RamiGO RamiGO
updated 10.7 years ago by ★ 8.2k • written 10.7 years ago by ▴ 40
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question about RamiGO adjM2gml
GO RamiGO GO RamiGO
12.4 years ago Guest User ★ 13k
6 results • Page 1 of 1
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Comment: Merge Replicates vs Mixed Model by gabriel.hoffman ▴ 170
For your proteomics data, your normalization is correct. I had assumed it was RNA-seq because that is what I think about most. When using…
Comment: What type of counts data to import for performing Isoform analysis in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth I will re-run Salmon with the --numGibbsSamples=50 option. Thank you.
Comment: Differential Expression Genes as Independent Variables by Gordon Smyth 52k
Such an analysis cannot be done in limma. Sorry, I cannot tell you how to do it or even whether it is possible.
Comment: Differential Expression Genes as Independent Variables by abadgerw • 0
The data that is repeated is a quantitative metric of post-mortem pathology across multiple sections. Not all patients have the same number…
Answer: Crossover design with limma by Gordon Smyth 52k
Your experiment is somewhat more elaborate than a classical crossover design because of the period-specific baseline controls. The analyses…
Votes
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
Transcript-level differential expression using DESeq2
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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