Bioconductor Ramigo

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1.4k

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RamiGO R gene ontology igraph

9.7 years ago bkellman • 0

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1.2k

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ramigo annotation readAmigoDot getAmigoTree

10.4 years ago evepash • 0

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1.1k

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ramigo

10.5 years ago Asta Laiho ▴ 120

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1.3k

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GO RamiGO GO RamiGO

updated 11.6 years ago by Dan Tenenbaum ★ 8.2k • written 11.6 years ago by Asta Laiho ▴ 120

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1.8k

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RamiGO RamiGO

updated 11.6 years ago by Dan Tenenbaum ★ 8.2k • written 11.6 years ago by suzy.stiegelmeyer@syngenta.com ▴ 40

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1.4k

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GO RamiGO GO RamiGO

13.3 years ago Guest User ★ 13k

6 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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