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rbiopaxparser
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bug in nem's transitive.reduction? (and thus rBiopaxParser)
nem
graphs
rbiopaxparser
7.3 years ago
Ramon Diaz-Uriarte
▴ 70
0
votes
1
reply
1.1k
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Rbiopaxparser: how to extract a subnetwork from a pathway
Rbiopaxparser
updated 9.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 9.6 years ago by
Guido Leoni
▴ 200
0
votes
2
replies
1.2k
views
rBiopaxParser error
rBiopaxParser
rBiopaxParser
updated 10.9 years ago by
Dan Tenenbaum
★ 8.2k • written 10.9 years ago by
suzy.stiegelmeyer@syngenta.com
▴ 40
0
votes
4
replies
1.3k
views
rBiopaxParser, Reactome and namespaces
rBiopaxParser
rBiopaxParser
updated 11.0 years ago by
Frank Kramer
▴ 60 • written 11.0 years ago by
Paul Shannon
▴ 470
0
votes
0
replies
1.1k
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BioPAX parsing
Pathways
Network
Rgraphviz
rBiopaxParser
Pathways
Network
Rgraphviz
rBiopaxParser
11.6 years ago
Frank Kramer
▴ 10
5 results • Page
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Comment: CombineArrays for EPIC and EPIC V2
by
Kim
• 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Answer: Too many significant genes when integrating gtex and tcga
by
James W. MacDonald
65k
See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Votes
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
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