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readaffy
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normalizing all affymetrix array type with affy package impossible with R 3.x ?
affy normalization affymetrix limma
Readaffy
8.6 years ago
florent.dumont
• 0
2
votes
3
replies
2.4k
views
hgu133plus2hsentrezgcdf or hgu133ahsentrezgcdf packages not installing
readaffy
frma
affy
package installation
hgu133a
6.1 years ago
Chris Mancuso
• 0
3
votes
1
reply
2.4k
views
Processing RAW CEL files from GEO
CEL
RAW
geoquery
readaffy
updated 9.5 years ago by
Sean Davis
21k • written 9.5 years ago by
PyPer
▴ 20
0
votes
3
replies
1.4k
views
ReadAffy does not take into account parameter sampleNames with phenoData object
affycoretools
ReadAffy
Biobase
phenoData
affy
updated 3.4 years ago by
James W. MacDonald
65k • written 3.4 years ago by
bastien_chassagnol
• 0
0
votes
1
reply
599
views
error on ReadAffry for CEL file
affyio.rdb
ReadAffy
updated 5.0 years ago by
James W. MacDonald
65k • written 5.0 years ago by
na396
• 0
5 results • Page
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Thank you, Michael. I used the script shared by you. The genomic distribution of the original and null loci looks like non-stationary. Plea…
Comment: ChAMP installation issue
by
shepherl
3.9k
Without showing the commands you tried and the full output including error it is impossible to help. Please provide additional information…
Answer: Gene set enrichment analysis
by
Guido Hooiveld
★ 3.9k
No, that is not possible. The idea of gene set enrichment analysis (GSEA) is that it checks which gene sets (pathways, GO categories) are e…
Comment: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
zzrammal
• 0
thank you for your response. The problem is resolved. When i did a fit for the linear model i put NULL for the design fit <- lmFit(count_…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ziliang
• 0
I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…
Votes
A: DEXSeq time course design
using variable in design formula
differential expression for Single-cell RNAseq data using edgeR
Why p value inconsistent when using different number of pathway score?
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
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