Biostar Readaffy

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271

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affycoretools ReadAffy Biobase phenoData affy

updated 7 months ago by James W. MacDonald 57k • written 7 months ago by bastien_chassagnol • 0

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176

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affyio.rdb ReadAffy

updated 2.2 years ago by James W. MacDonald 57k • written 2.2 years ago by na396 • 0

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1.2k

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readaffy frma affy package installation hgu133a

3.4 years ago Chris Mancuso • 0

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1.8k

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affy normalization affymetrix limma Readaffy

5.8 years ago florent.dumont • 0

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1.6k

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CEL RAW geoquery readaffy

updated 6.8 years ago by Sean Davis 21k • written 6.8 years ago by PyPer ▴ 20

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Comment: Problems with installation of 'phyloseq by shepherl 2.8k

GenomeInfoDbData is a Bioconductor package. Please use Bioconductor installation `BiocManager::install("GenomeInfoDbData")` and report an…

Comment: Permission denied when manually installing R packages(Rhdf5lib) by Mike Smith ★ 5.0k

Did you resolve this, as you seem to have gotten further in https://support.bioconductor.org/p/9138736/ ?

Answer: Compilation fatal error: iostream.h: No such file or directory when installing R by Mike Smith ★ 5.0k

On my Ubuntu system the `iostreams.h` header is provided by the package `libstdc++9-dev`. However that package is a dependency of `g++9` a…

Comment: Compilation fatal error: iostream.h: No such file or directory when installing R by Mike Smith ★ 5.0k

No you don't need to install HDF5 via Ubuntu. The Rhdf5lib package is essentially doing this, and is designed to provide a consistent vers…

Comment: derfinder model.matrix with limma or single base-level F-statistics analysis by Konstantinos Yeles ▴ 60

Dear Leonardo, in the section ***"6.1.2 Find DERs with limma"*** of the derfinder vignette it is explained how to perform an analysis in t…

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Answer: derfinder model.matrix with limma or single base-level F-statistics analysis

A: DESeq2: multiple conditions design -- How to select subset comparisons from the

Comment: Idea: Using DESeq2 to test a change in ratio of two genes

A: Normalized counts of DESeq2 affected by design formula?

A: Finding orthologous human/mouse ENSEMBL IDs

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