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reads
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0
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7
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1.8k
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Speeding up or replacing Loops to process Bam Reads
genomicranges
reads
genomicfeatures
Bam
9.1 years ago
gen
▴ 30
2
votes
5
replies
938
views
Software package for RNA-seq reads simulation?
rna-seq
reads
updated 4.9 years ago by
Gordon Smyth
50k • written 4.9 years ago by
Ramiro Magno
▴ 100
2
votes
3
replies
1.4k
views
Boxplot function not showing all reads length on x-axis
boxplot
reads
fastq
sequencing
rsubread
updated 4.9 years ago by
Wei Shi
★ 3.6k • written 4.9 years ago by
Raito92
▴ 60
0
votes
2
replies
951
views
DiffBind absence of reads
diffbind
reads
bamfiles
updated 7.1 years ago by
Rory Stark
★ 5.2k • written 7.1 years ago by
kbrnrc
• 0
2
votes
2
replies
3.1k
views
DESeq: filter out low count reads
deseq
filter
reads
9.3 years ago
ccheung
• 0
0
votes
1
reply
1.3k
views
DEXseq reads all in ambiguous_readpair_position and empty categories
dexseq
reads
6.9 years ago
514028929
• 0
0
votes
1
reply
2.2k
views
Rename read-chromosome-names to refseq-chromosome-names.
reads
updated 9.6 years ago by
James W. MacDonald
65k • written 9.6 years ago by
marcovth
• 0
7 results • Page
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Answer: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function?
by
Henrik Bengtsson
★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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