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filter deseq2

updated 17 months ago by Michael Love 42k • written 17 months ago by PD • 0

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R filter limma Normalization Microarray

18 months ago Abdul ▴ 20

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663

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filter gate_quad_tmix gt_gating

2.6 years ago • updated 2.4 years ago Pierre • 0

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832

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flowCore openCyto Summary Result Filter

updated 4.4 years ago by Jake Wagner ▴ 310 • written 4.5 years ago by noviello • 0

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RNA WGCNA filter

5.3 years ago modarzi ▴ 10

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929

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filter deseq2

updated 5.6 years ago by Michael Love 42k • written 5.6 years ago by charles.foster ▴ 160

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1.3k

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rtracklayer gff filter

updated 5.7 years ago by Michael Lawrence ★ 11k • written 5.7 years ago by alslonik • 0

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2.0k

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deseq2 filter genefilter

updated 6.9 years ago by Michael Love 42k • written 6.9 years ago by Björn • 0

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loop filter

written 6.9 years ago by kritikamish99 ▴ 10

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DGElist filter edgeR

updated 7.3 years ago by Gordon Smyth 51k • written 7.3 years ago by alakatos ▴ 130

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limma filter genelist differential gene expression

updated 8.0 years ago by Gordon Smyth 51k • written 8.0 years ago by bi_Scholar • 0

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missing data filter

updated 8.8 years ago by James W. MacDonald 67k • written 8.8 years ago by rgescudero • 0

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1.4k

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flowcore gate subsetting filter

updated 9.1 years ago by Jiang, Mike ★ 1.3k • written 9.1 years ago by peterfoster ▴ 20

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probe filter subset gene symbol affy

9.6 years ago alakatos ▴ 130

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3.7k

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bioconductor mas5 perfectmatch affymetrixchip filter

updated 9.6 years ago by James W. MacDonald 67k • written 9.6 years ago by svlachavas ▴ 830

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3.3k

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deseq filter reads

9.7 years ago ccheung • 0

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1.4k

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variantannotation vcf fixed filter

9.8 years ago • updated 9.7 years ago Anna N. • 0

17 results • Page 1 of 1

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Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 67k

That error indicates that you have a file called NCBI.sqlite in your working directory that is missing some tables. You should delete that …

Comment: Are transformed values from rlog /vst log2 normalized counts? by James W. MacDonald 67k

The `DESeq2` package is meant to analyze count data! Most packages that are intended to be used for RNA-Seq data are going to want the raw …

Comment: Are transformed values from rlog /vst log2 normalized counts? by Eva ▴ 10

Many thanks for you detailed answer, I really appreciate it. Could you give me an example (or more if possible) of analysis using count-b…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gabriela • 0

Hi, I have the same issue as you! Does this happen because of internet speed? I already downloaded 2 times these files! > makeOrgPacka…

Answer: Are transformed values from rlog /vst log2 normalized counts? by James W. MacDonald 67k

They are not counts because counts are integers. ``` > z <- makeExampleDESeqDataSet() ## These are counts > head(assay(z)) sam…

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Answer: Unable to install any Bioconductor package with new R 4.4.1 - path nor writable

Removing Effect of Covariate in Only a Subset of Samples in a Model Containing All Samples Loses Full Rank if Factor but not Numerical

Comment: How to conduct maSigPro analysis with only one condition?

Comment: Spectra and PSMatch- trouble in reducePSMs, joinSpectraData, or countIdentificat

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