Biostar Filter

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votes

157

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flowCore openCyto Summary Result Filter

updated 16 months ago by Jake Wagner ▴ 280 • written 18 months ago by noviello • 0

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332

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RNA WGCNA filter

2.2 years ago modarzi ▴ 10

vote

257

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filter deseq2

updated 2.5 years ago by Michael Love 34k • written 2.5 years ago by charles.foster ▴ 110

votes

375

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rtracklayer gff filter

updated 2.6 years ago by Michael Lawrence 11k • written 2.6 years ago by alslonik • 0

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800

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deseq2 filter genefilter

updated 3.8 years ago by Michael Love 34k • written 3.9 years ago by Björn • 0

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replies

1.4k

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loop filter

written 3.9 years ago by kritikamish99 ▴ 10

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replies

1.4k

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DGElist filter edgeR

updated 4.2 years ago by Gordon Smyth 43k • written 4.2 years ago by alakatos ▴ 110

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replies

776

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limma filter genelist differential gene expression

updated 4.9 years ago by Gordon Smyth 43k • written 4.9 years ago by bi_Scholar • 0

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642

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missing data filter

updated 5.8 years ago by James W. MacDonald 58k • written 5.8 years ago by rgescudero • 0

votes

709

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flowcore gate subsetting filter

updated 6.0 years ago by Jiang, Mike ★ 1.3k • written 6.0 years ago by peterfoster ▴ 20

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1.8k

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probe filter subset gene symbol affy

6.6 years ago alakatos ▴ 110

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replies

2.6k

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bioconductor mas5 perfectmatch affymetrixchip filter

updated 6.6 years ago by James W. MacDonald 58k • written 6.6 years ago by svlachavas ▴ 780

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2.3k

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deseq filter reads

6.7 years ago ccheung • 0

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820

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variantannotation vcf fixed filter

6.7 years ago Anna N. • 0

14 results • Page 1 of 1

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Comment: Combining two groups in contrast deseq2 by Bine ▴ 20

Thank you I looked at ?results: ## Example 1: two-group comparison dds <- makeExampleDESeqDataSet(m=4) dds <- DESeq(…

Comment: Volcano plots of DEGs from Swish are weird by Qin ▴ 10

Thans for your reply. I'm sorry for reply so late, because I didn't getting any messages in my email. I will read details of the vignette.

Comment: At least one covariate is confounded with batch! Please remove confounded covari by NewBioInfo • 0

Thank you, James. I was indeed using the wrong matrix. The `nonExtimable` did give me the column name which was causing the issue but I do …

Comment: Returning to edgeR version 3.26.1? by Gordon Smyth 43k

I don't think that any changes to edgeR between 3.26.1 and 3.26.8 could have caused the changes that you show.

Comment: Returning to edgeR version 3.26.1? by mvanhorn • 0

Thank you very much for your reply! Our project is a reanalysis of large sets of RNA-seq data to identify circular RNAs using the CIRIquan…

Votes

A: Error in DESeqDataSet : some values in assay are not integers

simultaneous use of robust and weighting methods in limma

Answer: Swish direction of comparison based on order of factors

Comment: Gradient dotplot

Awards • All

Scholar to Gordon Smyth 43k

Popular Question to Dario Strbenac ★ 1.5k

Popular Question to Hans-Ulrich Klein ▴ 330