Bioconductor Filter

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366

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RNASeq filter design edgeR model.matrix

27 days ago • updated 26 days ago mohammedtoufiq91 ▴ 10

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1.5k

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filter deseq2

updated 2.8 years ago by Michael Love 43k • written 2.8 years ago by PD • 0

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1.9k

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R filter limma Normalization Microarray

2.8 years ago Abdul ▴ 20

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963

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filter gate_quad_tmix gt_gating

3.9 years ago • updated 3.8 years ago Pierre • 0

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1.2k

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flowCore openCyto Summary Result Filter

updated 5.8 years ago by Jake Wagner ▴ 310 • written 5.9 years ago by noviello • 0

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2.1k

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RNA WGCNA filter

6.6 years ago modarzi ▴ 10

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1.3k

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filter deseq2

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by charles.foster ▴ 180

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1.6k

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rtracklayer gff filter

updated 7.0 years ago by Michael Lawrence ★ 11k • written 7.0 years ago by alslonik • 0

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2.4k

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deseq2 filter genefilter

updated 8.2 years ago by Michael Love 43k • written 8.3 years ago by Björn • 0

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4.7k

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loop filter

written 8.2 years ago by kritikamish99 ▴ 10

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4.3k

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DGElist filter edgeR

updated 8.6 years ago by Gordon Smyth 53k • written 8.6 years ago by alakatos ▴ 130

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1.7k

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limma filter genelist differential gene expression

updated 9.3 years ago by Gordon Smyth 53k • written 9.3 years ago by bi_Scholar • 0

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1.3k

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missing data filter

updated 10.2 years ago by James W. MacDonald 68k • written 10.2 years ago by rgescudero • 0

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1.8k

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flowcore gate subsetting filter

updated 10.4 years ago by Jiang, Mike ★ 1.3k • written 10.4 years ago by peterfoster ▴ 20

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3.3k

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probe filter subset gene symbol affy

10.9 years ago alakatos ▴ 130

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4.4k

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bioconductor mas5 perfectmatch affymetrixchip filter

updated 11.0 years ago by James W. MacDonald 68k • written 11.0 years ago by svlachavas ▴ 840

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3.7k

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deseq filter reads

11.1 years ago ccheung • 0

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1.8k

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variantannotation vcf fixed filter

11.1 years ago Anna N. • 0

18 results • Page 1 of 1

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Comment: GSEA in R/Bioconductor course by a2a2haa • 0

Academic researchers often share their breakthroughs and course updates through visual stories, making it essential to have tools that pres…

Comment: Bulk RNAseq analysis for by Mariami • 0

Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…

Answer: Bulk RNAseq analysis for by Gordon Smyth 53k

All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…

Comment: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open fo by a2a2haa • 0

By promoting reproducible analysis, the scientific community can better understand the precise mechanisms that make [Hydrogen inhalation sa…

Answer: Bulk RNAseq analysis for by James W. MacDonald 68k

In my experience, the within-clone variability of differentiated stem cells is often as large or larger than the between-clone variability,…

Votes

Comment: Are transformed values from rlog /vst log2 normalized counts?

Are transformed values from rlog /vst log2 normalized counts?

Answer: Bulk RNAseq analysis for

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

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