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openCyto's gate_quad_tmix broken when reading from gating template (and a bit more)
filter
gate_quad_tmix
gt_gating
5 months ago • updated 3 months ago
Pierre
• 0
0
votes
1
reply
278
views
FlowCore openCyto: problem with summary(result)
flowCore
openCyto
Summary
Result
Filter
updated 2.3 years ago by
Jake Wagner
▴ 300 • written 2.4 years ago by
noviello
• 0
1
vote
1
reply
544
views
how to filter genes in significant module?
RNA
WGCNA
filter
3.1 years ago
modarzi
▴ 10
1
vote
1
reply
365
views
Finding genes that are expressed only in one condition within a contrast
filter
deseq2
updated 3.4 years ago by
Michael Love
37k • written 3.4 years ago by
charles.foster
▴ 140
0
votes
1
reply
533
views
How to filter gff based on certain gene list in rtracklayer?
rtracklayer
gff
filter
updated 3.5 years ago by
Michael Lawrence
11k • written 3.5 years ago by
alslonik
• 0
0
votes
1
reply
1.0k
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, ?
deseq2
filter
genefilter
updated 4.7 years ago by
Michael Love
37k • written 4.8 years ago by
Björn
• 0
1
vote
8
replies
2.3k
views
How to filter all column using Loop
loop
filter
written 4.8 years ago by
kritikamish99
▴ 10
2
votes
4
replies
1.9k
views
Filtering DGEList object in edgeR
DGElist
filter
edgeR
updated 5.1 years ago by
Gordon Smyth
46k • written 5.1 years ago by
alakatos
▴ 120
4
votes
2
replies
877
views
limma; Only fit list of certain genes/ filter eSet
limma
filter
genelist
differential gene expression
updated 5.8 years ago by
Gordon Smyth
46k • written 5.8 years ago by
bi_Scholar
• 0
1
vote
1
reply
739
views
filter rows by missing values frequency
missing data
filter
updated 6.7 years ago by
James W. MacDonald
60k • written 6.7 years ago by
rgescudero
• 0
0
votes
1
reply
927
views
Inconsistent Subseting using norm2Filter in FlowCore
flowcore
gate
subsetting
filter
updated 6.9 years ago by
Jiang, Mike
★ 1.3k • written 6.9 years ago by
peterfoster
▴ 20
0
votes
3
replies
1.9k
views
filtering out probes with no gene symbol from expressionSet
probe
filter
subset
gene symbol
affy
7.5 years ago
alakatos
▴ 120
3
votes
11
replies
2.8k
views
Filtering on present/absent calls methodology and perfect match only arrays
bioconductor
mas5
perfectmatch
affymetrixchip
filter
updated 7.5 years ago by
James W. MacDonald
60k • written 7.5 years ago by
svlachavas
▴ 800
2
votes
2
replies
2.6k
views
DESeq: filter out low count reads
deseq
filter
reads
7.6 years ago
ccheung
• 0
3
votes
2
replies
928
views
VariantAnnotation package, subseting vcfs on fixed fields
variantannotation
vcf
fixed
filter
7.6 years ago
Anna N.
• 0
15 results • Page
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Comment: Retrieve gene summary start/end in biomart query
by
rbenel
▴ 20
Hi Mike, I have tried the query without the transcript, and I believe there are cases where I will receive unique transcript start/end si…
Comment: MMDiff2 memory issues
by
e.iich
• 0
running against a similar issue. Have you found any solutions?
Answer: mapToAlignments_issue
by
Hervé Pagès
15k
> I would expect in case of reverse alignment lifted ranges to correspond to position 91-100 of the query sequence. Nope. Local coordinate…
Answer: Problem related to `biomaRt::getBM()` during `R CMD check` execution
by
James W. MacDonald
60k
Does the section in the biomaRt vignette that talks about caching (and using a temp dir) help?
Comment: OPLS-DA: confidence interval for accuracy metric
by
Eddie
• 0
Worked well under pROC. Thank you
Votes
A: EGSEA error during report generation: "only 0's may be mixed with negative subsc
Answer: mapToAlignments_issue
Analysis of peaks generated from Homer using Diffbind
How to select summit size for histone ChiP-Seq in Diffbind
Comment: GSEA with Wikipathways not entirely reproducible
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