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reads
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2
votes
3
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1.5k
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Boxplot function not showing all reads length on x-axis
boxplot
reads
fastq
sequencing
rsubread
updated 5.0 years ago by
Wei Shi
★ 3.6k • written 5.0 years ago by
Raito92
▴ 60
2
votes
5
replies
945
views
Software package for RNA-seq reads simulation?
rna-seq
reads
updated 5.0 years ago by
Gordon Smyth
50k • written 5.0 years ago by
Ramiro Magno
▴ 100
0
votes
1
reply
1.3k
views
DEXseq reads all in ambiguous_readpair_position and empty categories
dexseq
reads
6.9 years ago
514028929
• 0
0
votes
2
replies
960
views
DiffBind absence of reads
diffbind
reads
bamfiles
updated 7.1 years ago by
Rory Stark
★ 5.2k • written 7.1 years ago by
kbrnrc
• 0
0
votes
7
replies
1.8k
views
Speeding up or replacing Loops to process Bam Reads
genomicranges
reads
genomicfeatures
Bam
9.2 years ago
gen
▴ 30
2
votes
2
replies
3.1k
views
DESeq: filter out low count reads
deseq
filter
reads
9.4 years ago • updated 9.3 years ago
ccheung
• 0
0
votes
1
reply
2.2k
views
Rename read-chromosome-names to refseq-chromosome-names.
reads
updated 9.6 years ago by
James W. MacDonald
66k • written 9.6 years ago by
marcovth
• 0
7 results • Page
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Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
by
James W. MacDonald
66k
Yes, you can use `limma`.
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
66k
In that case, probably easiest to subset to the groups being compared.
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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