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reduce
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1
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9
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1.6k
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Big data for IRanges: Combining reduce and gaps with dplyr functions
r
iranges
reduce
gaps
8.5 years ago
pesquivel
• 0
1
vote
6
replies
3.3k
views
reduce function in GenomicRanges
genomicranges
reduce
updated 6.8 years ago by
Hervé Pagès
16k • written 6.8 years ago by
Frocha
▴ 20
3
votes
3
replies
1.2k
views
aggregate bins in large SummarizedExperiment efficiently
granges
summarizedexperiment
reduce
updated 7.7 years ago by
Michael Lawrence
★ 11k • written 7.7 years ago by
alessandro.pastore
▴ 20
1
vote
2
replies
1.2k
views
extending GenomicRanges::reduce warning, why ?
GenomicRanges
reduce
setMethod
setGeneric
updated 6.2 years ago by
Martin Morgan
25k • written 6.2 years ago by
hauken_heyken
▴ 80
0
votes
1
reply
1.2k
views
reduce granges if mcols value are ideitical with the next intervals
granges
reduce
6.8 years ago
alessandro.pastore
▴ 20
4
votes
1
reply
3.0k
views
Collapse/Reduce in GRanges by Metadata Column
granges
merge
reduce
updated 7.9 years ago by
Michael Lawrence
★ 11k • written 7.9 years ago by
nhejazi
• 0
0
votes
0
replies
1.3k
views
Big data for IRanges: Combining reduce and gaps with dplyr functions
r
iranges
reduce
gaps
8.5 years ago
pesquivel
• 0
7 results • Page
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
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by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
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I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
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It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
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