Showing : regression • reset
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Reference on linear models [was LIMMA makeContrasts question]
Regression limma Regression limma
19.0 years ago Gordon Smyth 53k
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863
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Reference on linear models
Regression limma Regression limma
19.0 years ago Katherine Lawler ▴ 10
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1.1k
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tricky batch problem
Metabolomics Regression Metabolomics Regression
19.1 years ago E. Schwarz ▴ 10
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817
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December Courses: (1) R/Splus Fundamentals and Programming Techniques (2) Regression Modeling Strategies in R/Splus
Regression Regression
19.1 years ago sue@xlsolutions-corp.com ▴ 570
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793
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(1) R/Splus Advanced Programming, NYC, Sept 11-12 (2) Regression Modeling Strategies in R/Splus, Sept 28-29
Regression Regression
19.3 years ago sue@xlsolutions-corp.com ▴ 570
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2.2k
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Limma weights, P values and differential expression
Normalization Bayesian Regression probe limma Normalization Bayesian Regression probe
19.3 years ago Gordon Smyth 53k
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1.1k
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3 Courses: (1) Prof Frank Harrell *** Regression Modeling Strategies in R/Splus, (2) R/Splus Advanced Programming, (3) R/Splus Fundamentals and Progr…
GO Regression GO Regression
19.3 years ago sue@xlsolutions-corp.com ▴ 570
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811
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Limma toptable question
Microarray Regression limma Microarray Regression limma
20.0 years ago Gordon Smyth 53k
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1.3k
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permutation/resampling FDR correction
Regression limma Regression limma
20.4 years ago Matthew Hannah ▴ 940
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1
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946
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Binary regression trees
Regression Regression
updated 20.6 years ago by ▴ 210 • written 20.6 years ago by ▴ 10
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1.2k
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LIMMA:design (1, 2, 3, 3 ) , I got EXCITING results what could be the logic, since i have 2 replicates for 3rd group only?
Microarray GO Regression affy limma Microarray GO Regression affy limma
20.6 years ago Gordon Smyth 53k
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2.8k
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Cox MTP question
Microarray Regression multtest Microarray Regression multtest
20.6 years ago kpollard ▴ 110
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2
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4.0k
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multtest and Cox regression
Regression multtest Regression multtest
updated 20.6 years ago by ▴ 10 • written 20.6 years ago by ▴ 140
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850
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Gene selection: association with linear response and correction for multi test
Regression limma siggenes Regression limma siggenes
20.7 years ago david neil hayes ▴ 70
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1
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2.5k
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Dose-Response: Regressiion and ANOVA
Regression DOSE Regression DOSE
updated 20.9 years ago by ▴ 360 • written 20.9 years ago by ▴ 620
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1.2k
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Confusion over limma documentation and design/contrast matrix
GO Regression limma GO Regression limma
21.1 years ago michael watson IAH-C ★ 3.4k
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1.2k
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Confusion over limma documentation and design/contrast matrix
GO Regression limma GO Regression limma
21.1 years ago Gordon Smyth 53k
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935
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Re: limma linear model [was: (no subject)]
Regression Regression
21.2 years ago karen ▴ 30
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996
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limma linear model [was: (no subject)]
Regression Regression
21.2 years ago Gordon Smyth 53k
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965
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re: Loess
Regression Regression
21.2 years ago David Lee Duewer ▴ 40
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1.2k
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Unexpected results using limma with numerical factor - regression intercept?
GO Regression limma convert GO Regression limma convert
21.3 years ago Gordon Smyth 53k
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1.2k
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Unexpected results using limma with numerical factor - regression intercept?
GO Regression limma GO Regression limma
21.3 years ago Matthew Hannah ▴ 940
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1.2k
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RE: Design matrix with multiple genotypes + quantified variables (+cor/regression)
Regression limma Regression limma
21.3 years ago Gordon Smyth 53k
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1.1k
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RE: Design matrix with multiple genotypes + quantified variables (+cor/regression)
Regression limma Regression limma
21.3 years ago Matthew Hannah ▴ 940
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822
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Design matrix with multiple genotypes + quantified variables
Regression Regression
21.3 years ago Matthew Hannah ▴ 940
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2
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1.3k
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Drosophila GeneChip analysis
Regression Regression
updated 21.6 years ago by ▴ 620 • written 21.6 years ago by ▴ 30
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1.1k
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Interpretation of output of AffyRNAdeg and hist commands
Microarray Regression Cancer affyPLM Microarray Regression Cancer affyPLM
21.6 years ago James W. MacDonald 68k
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1.9k
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M vs A plot
Microarray Normalization Regression Cancer marray Microarray Normalization Regression
updated 21.8 years ago by ★ 6.0k • written 21.8 years ago by ★ 2.0k
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1.5k
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question about limma fit differences?
Regression limma Regression limma
updated 21.8 years ago by 53k • written 21.8 years ago by ▴ 20
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1.3k
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Conference announcement: Compstat 2004
Visualization Bayesian Classification Clustering Regression Visualization Bayesian
21.9 years ago Wolfgang Huber ★ 13k
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1.0k
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mean versus linear model?
Regression limma Regression limma
updated 21.9 years ago by ★ 6.0k • written 21.9 years ago by ▴ 340
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Release of Bioconductor 1.3
Microarray Annotation Normalization GO Classification Regression Cancer hgu95a cdf probe
22.1 years ago A.J. Rossini ▴ 810
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1.3k
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Conference announcement: Compstat 2004
Visualization Bayesian Classification Clustering Regression Visualization Bayesian
22.1 years ago Wolfgang Huber ★ 13k
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923
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Off topic: predoctoral grant
Regression Survival Cancer Regression Survival Cancer
22.2 years ago Ramon Diaz ★ 1.1k
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997
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p-value adjustment when two or more genes are compared at same time
Regression Cancer multtest Regression Cancer multtest
22.3 years ago Jason Liao ▴ 10
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1.4k
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Huber et al: Variance stabilization ...
Microarray Regression Microarray Regression
updated 22.8 years ago by ★ 13k • written 22.8 years ago by ▴ 60
136 results • Page 3 of 3
Recent ...
Replies
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to jared.andrews07 ▴ 30
Popular Question to James W. MacDonald 68k
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