Showing : regression • reset
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Reference on linear models [was LIMMA makeContrasts question]
Regression limma Regression limma
18.8 years ago Gordon Smyth 53k
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Reference on linear models
Regression limma Regression limma
18.8 years ago Katherine Lawler ▴ 10
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tricky batch problem
Metabolomics Regression Metabolomics Regression
18.8 years ago E. Schwarz ▴ 10
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December Courses: (1) R/Splus Fundamentals and Programming Techniques (2) Regression Modeling Strategies in R/Splus
Regression Regression
18.9 years ago sue@xlsolutions-corp.com ▴ 570
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(1) R/Splus Advanced Programming, NYC, Sept 11-12 (2) Regression Modeling Strategies in R/Splus, Sept 28-29
Regression Regression
19.0 years ago sue@xlsolutions-corp.com ▴ 570
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Limma weights, P values and differential expression
Normalization Bayesian Regression probe limma Normalization Bayesian Regression probe
19.1 years ago Gordon Smyth 53k
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3 Courses: (1) Prof Frank Harrell *** Regression Modeling Strategies in R/Splus, (2) R/Splus Advanced Programming, (3) R/Splus Fundamentals and Progr…
GO Regression GO Regression
19.1 years ago sue@xlsolutions-corp.com ▴ 570
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Limma toptable question
Microarray Regression limma Microarray Regression limma
19.8 years ago Gordon Smyth 53k
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1.3k
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permutation/resampling FDR correction
Regression limma Regression limma
20.2 years ago Matthew Hannah ▴ 940
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Binary regression trees
Regression Regression
updated 20.4 years ago by ▴ 210 • written 20.4 years ago by ▴ 10
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LIMMA:design (1, 2, 3, 3 ) , I got EXCITING results what could be the logic, since i have 2 replicates for 3rd group only?
Microarray GO Regression affy limma Microarray GO Regression affy limma
20.4 years ago Gordon Smyth 53k
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2.7k
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Cox MTP question
Microarray Regression multtest Microarray Regression multtest
20.4 years ago kpollard ▴ 110
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multtest and Cox regression
Regression multtest Regression multtest
updated 20.4 years ago by ▴ 10 • written 20.4 years ago by ▴ 140
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Gene selection: association with linear response and correction for multi test
Regression limma siggenes Regression limma siggenes
20.5 years ago david neil hayes ▴ 70
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Dose-Response: Regressiion and ANOVA
Regression DOSE Regression DOSE
updated 20.7 years ago by ▴ 360 • written 20.7 years ago by ▴ 620
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Confusion over limma documentation and design/contrast matrix
GO Regression limma GO Regression limma
20.8 years ago michael watson IAH-C ★ 3.4k
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Confusion over limma documentation and design/contrast matrix
GO Regression limma GO Regression limma
20.8 years ago Gordon Smyth 53k
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905
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Re: limma linear model [was: (no subject)]
Regression Regression
20.9 years ago karen ▴ 30
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970
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limma linear model [was: (no subject)]
Regression Regression
20.9 years ago Gordon Smyth 53k
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929
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re: Loess
Regression Regression
21.0 years ago David Lee Duewer ▴ 40
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Unexpected results using limma with numerical factor - regression intercept?
GO Regression limma convert GO Regression limma convert
21.1 years ago Gordon Smyth 53k
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1.2k
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Unexpected results using limma with numerical factor - regression intercept?
GO Regression limma GO Regression limma
21.1 years ago Matthew Hannah ▴ 940
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RE: Design matrix with multiple genotypes + quantified variables (+cor/regression)
Regression limma Regression limma
21.1 years ago Gordon Smyth 53k
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RE: Design matrix with multiple genotypes + quantified variables (+cor/regression)
Regression limma Regression limma
21.1 years ago Matthew Hannah ▴ 940
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795
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Design matrix with multiple genotypes + quantified variables
Regression Regression
21.1 years ago Matthew Hannah ▴ 940
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1.3k
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Drosophila GeneChip analysis
Regression Regression
updated 21.3 years ago by ▴ 620 • written 21.3 years ago by ▴ 30
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Interpretation of output of AffyRNAdeg and hist commands
Microarray Regression Cancer affyPLM Microarray Regression Cancer affyPLM
21.4 years ago James W. MacDonald 68k
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M vs A plot
Microarray Normalization Regression Cancer marray Microarray Normalization Regression
updated 21.6 years ago by ★ 6.0k • written 21.6 years ago by ★ 2.0k
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1.4k
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question about limma fit differences?
Regression limma Regression limma
updated 21.6 years ago by 53k • written 21.6 years ago by ▴ 20
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1.2k
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Conference announcement: Compstat 2004
Visualization Bayesian Classification Clustering Regression Visualization Bayesian
21.6 years ago Wolfgang Huber ★ 13k
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1.0k
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mean versus linear model?
Regression limma Regression limma
updated 21.7 years ago by ★ 6.0k • written 21.7 years ago by ▴ 340
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Release of Bioconductor 1.3
Microarray Annotation Normalization GO Classification Regression Cancer hgu95a cdf probe
21.9 years ago A.J. Rossini ▴ 810
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Conference announcement: Compstat 2004
Visualization Bayesian Classification Clustering Regression Visualization Bayesian
21.9 years ago Wolfgang Huber ★ 13k
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890
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Off topic: predoctoral grant
Regression Survival Cancer Regression Survival Cancer
22.0 years ago Ramon Diaz ★ 1.1k
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970
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p-value adjustment when two or more genes are compared at same time
Regression Cancer multtest Regression Cancer multtest
22.1 years ago Jason Liao ▴ 10
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1.4k
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Huber et al: Variance stabilization ...
Microarray Regression Microarray Regression
updated 22.6 years ago by ★ 13k • written 22.6 years ago by ▴ 60
136 results • Page 3 of 3
Recent ...
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Comment: Heatmap of the Count Matrix by ArnulfoByrd • 0
Perhaps PCA loadings offer a more comprehensive perspective. Now, thinking back, I recall struggling with a similar data reduction dilemma …
Answer: readBam vs read_bam_insert_metrics by James W. MacDonald 68k
Depends on what you mean by input. If you mean to ask if you use `readBam` to generate something to use as an argument to `read_bam_insert_…
Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by James W. MacDonald 68k
There is an example in the help page for `forgeBSgenomePkgFromTwobitFile`. Have you tried emulating that?
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k
What you describe sounds a good approach to me. I would also use sample weights (`sample.weights=TRUE` when running `voomLmFit`) and robust…
Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k
I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…
Votes
Answer: Limpa Pipeline Order
A: How barcode-plot enrichment is calculated?
A: How barcode-plot enrichment is calculated?
Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
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