Showing : regression • reset
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Binomial regression of HTqPCR data
Regression HTqPCR Regression HTqPCR
14.1 years ago Christopher Howerton ▴ 40
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Regression analysis using expression microarray to determine phenotypic correlation
Microarray Regression Microarray Regression
14.1 years ago Ruppert Valentino ▴ 270
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6
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1.9k
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SNPcounts error in SNPlocs.Hsapiens.dbSNP.20110815_0.99.3 (i.e., my attempt to update SNPlocs to dbSNP build 134)
Regression SNPlocs Biostrings Regression SNPlocs Biostrings
updated 14.2 years ago by 6.7k • written 14.2 years ago by ★ 4.2k
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Newbe question
Regression Regression
14.4 years ago SimonNoël ▴ 450
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Multiple regression, how to do fit all/stepwise/backward methods
Regression Regression
14.4 years ago Andrea Grilli ▴ 240
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2.0k
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limma: multiple regression
Regression Yeast yeast2 limma Regression Yeast yeast2 limma
14.5 years ago Gordon Smyth 53k
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1
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2.3k
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maSigPro and "subscript out of bounds"
Normalization Regression maSigPro Normalization Regression maSigPro
updated 14.5 years ago by ▴ 240 • written 14.5 years ago by ★ 6.8k
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maSigPro and "subscript out of bounds"
Normalization Regression maSigPro Normalization Regression maSigPro
14.5 years ago Andrea Grilli ▴ 240
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Evidence-based guidelines for use the method="robust" option in lmFit
Microarray Normalization Bayesian Regression Cancer limma Microarray Normalization Cancer
updated 6 months ago by • 0 • written 14.5 years ago by ★ 2.0k
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Bayesian additive regression trees (BART) for classification analysis of gene expression data
Bayesian Regression Bayesian Regression
14.8 years ago Santosh Patnaik ▴ 30
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3
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2.7k
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limma report logFC confidence interval?
Regression limma Regression limma
updated 4.5 years ago by 53k • written 14.9 years ago by ▴ 40
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3
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1.8k
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GCRMA: feature request
GO Regression probe gcrma frma GO Regression probe gcrma frma
updated 14.9 years ago by ▴ 250 • written 14.9 years ago by ★ 4.1k
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limma report logFC confidence interval?
Regression Regression
15.0 years ago Timothy Wu ▴ 120
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qPCR Event Calendar - winter 2010
SNP qPCR Genetics Normalization Clustering Regression Cancer Breast Xenopus laevis probe
15.1 years ago qPCR Platform - the reference in real-t… ▴ 170
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992
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limma makeContrasts
GO Regression limma GO Regression limma
15.2 years ago Sunny Srivastava ▴ 350
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821
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Limma -time course - no replicates
Regression limma Regression limma
15.3 years ago Yair Benita ▴ 80
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1.6k
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IRanges: interaction with model fitting
Regression IRanges Regression IRanges
updated 15.3 years ago by 25k • written 15.3 years ago by ★ 6.5k
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4
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1.8k
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Model variable optimisation
Regression probe limma AgiMicroRna Regression probe limma AgiMicroRna
updated 15.4 years ago by ▴ 330 • written 15.4 years ago by ▴ 60
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[maSigPro] get.siggenes, PlotGroups - results
Regression Regression
15.6 years ago boczniak767 ▴ 740
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1.2k
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missing values in limma/contrasts.fit
Microarray limma Regression probe
16.0 years ago • updated 4 days ago Gordon Smyth 53k
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1.7k
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IRanges causes bug in complete.cases
Regression IRanges Regression IRanges
updated 16.0 years ago by ★ 11k • written 16.0 years ago by ★ 6.5k
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Bioconductor 2.5 is released
Sequencing miRNA Microarray qPCR Annotation Network Bayesian Regression CGH stam Rintact
16.1 years ago Patrick Aboyoun ★ 1.6k
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1.9k
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paired microarray samples
Regression limma beadarray Regression limma beadarray
updated 16.1 years ago by ★ 6.0k • written 16.1 years ago by ▴ 60
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1
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predict an ordinal response variable from high-throughput gene expression data
Microarray Regression Microarray Regression
updated 16.1 years ago by ▴ 30 • written 16.1 years ago by ★ 1.0k
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2
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how to create an affybatch
Normalization Regression hgu133a probe Normalization Regression hgu133a probe
16.4 years ago Venkat Sundar ▴ 30
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Filter before? Filter after? With maanova
Regression probe maanova Regression probe maanova
updated 16.4 years ago by ★ 5.5k • written 16.4 years ago by ★ 1.0k
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Commands with maanova
Regression maanova Regression maanova
16.4 years ago Loren Engrav ★ 1.0k
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RMA (model II) regression with lmFit
Regression Regression
16.4 years ago Paolo Innocenti ▴ 320
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New microRNA & qPCR workshop in April 2009
SNP qPCR Normalization Regression microRNA SNP qPCR Normalization Regression microRNA
16.7 years ago qPCR Platform - the reference in real-t… ▴ 170
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CMA package: variable selection with limma
Microarray Classification Regression limma CMA Microarray Classification Regression limma
16.8 years ago Renaud Gaujoux ▴ 170
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qPCR 2009 Event Agenda Online
SNP qPCR Normalization Visualization Regression Cancer probe microRNA SNP qPCR Cancer
16.8 years ago qPCR Platform - the reference in real-t… ▴ 170
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NEW deadline - Talk & Poster Call - qPCR 2009 Event
SNP qPCR Normalization Visualization Regression Cancer probe microRNA SNP qPCR Cancer
16.9 years ago qPCR Platform - the reference in real-t… ▴ 170
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1.7k
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Talk & Poster - Final Call - qPCR 2009 Event
SNP qPCR Normalization Visualization Regression Cancer probe PROcess microRNA SNP qPCR
17.0 years ago qPCR Platform - the reference in real-t… ▴ 170
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1
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2.7k
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forward conditional Cox and logistic regression
Genetics Regression Survival Genetics Regression Survival
updated 17.0 years ago by ★ 2.3k • written 17.0 years ago by ▴ 130
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Talk & Poster Call - qPCR 2009 Event
SNP qPCR Normalization Visualization Regression Cancer probe PROcess microRNA SNP qPCR
17.0 years ago qPCR Platform - the reference in real-t… ▴ 170
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1.3k
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Does old workspace work?
Regression probe gcrma PROcess maanova Regression probe gcrma PROcess maanova
updated 17.1 years ago by ★ 6.5k • written 17.1 years ago by ★ 1.0k
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Maanova & createdata
Regression maanova Regression maanova
updated 17.1 years ago by ▴ 450 • written 17.1 years ago by ★ 1.0k
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multiscan package announcement
Regression Regression
17.1 years ago Mizanur Khondoker ▴ 10
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limma: Combining probe level data prior to fitting
Microarray Preprocessing Regression Yeast probe affy limma Microarray Preprocessing Yeast
17.1 years ago Alex Gutteridge ▴ 650
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5
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3.6k
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Finding genes with significant linear regression or trend
Microarray Regression Cancer limma DOSE Microarray Regression Cancer limma DOSE
updated 17.5 years ago by ▴ 340 • written 17.5 years ago by ★ 1.9k
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extremely low adjusted p-values in regression using limma
Microarray Regression limma Microarray Regression limma
17.8 years ago Gordon Smyth 53k
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MolPAGE Training Workshop on Causal Inference - 19-21 May 2008
Genetics Regression Genetics Regression
17.8 years ago Brian D M Tom ▴ 50
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4
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2.6k
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How to create nested data frames
Regression Regression
18.1 years ago Ana Conesa ▴ 130
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1
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1.6k
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Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
18.2 years ago Hervé Pagès 16k
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1.3k
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batch effects and VSN
Normalization Regression vsn limma oligo Normalization Regression vsn limma oligo
updated 18.2 years ago by ★ 13k • written 18.2 years ago by ▴ 330
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Pvalue permutation of Linear regression
Regression Regression
18.4 years ago Benjamin Otto ▴ 830
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937
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Regressions in multtest
Regression Regression
18.4 years ago Benjamin Otto ▴ 830
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938
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9 Courses: Upcoming July 2007 R/S+ schedule by XLSolutions Corp
Regression Regression
18.5 years ago sue@xlsolutions-corp.com ▴ 570
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5
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1.7k
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limma question: direct two-color design & modeling individual subject effects
SystemsBiology Regression probe limma SystemsBiology Regression probe limma
updated 18.6 years ago by ★ 1.1k • written 18.6 years ago by 53k
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Course*** R/S+: Fundamentals and Programming Techniques - Princeton, March 1-2
Microarray Classification Clustering Regression Microarray Classification Clustering
18.8 years ago sue@xlsolutions-corp.com ▴ 570
136 results • Page 2 of 3
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Replies
Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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Popular Question to James W. MacDonald 68k
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