Bioconductor Rmat

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1.3k

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rMAT rMAT

11.0 years ago 周在威 ▴ 20

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837

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rMAT rMAT

12.1 years ago Paul Hatton ▴ 10

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1.3k

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rMAT rMAT

updated 14.6 years ago by Raphael Gottardo ▴ 40 • written 14.6 years ago by Larry Singh ▴ 20

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908

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rMAT rMAT

14.7 years ago Patrick Schorderet ▴ 50

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1.7k

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Preprocessing GUI rMAT Preprocessing GUI rMAT

14.7 years ago Patrick Schorderet ▴ 50

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1.0k

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GUI rMAT GUI rMAT

updated 14.7 years ago by Wolfgang Huber ★ 13k • written 14.7 years ago by Patrick Schorderet ▴ 50

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1.2k

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Normalization Preprocessing rtracklayer IRanges rMAT Normalization Preprocessing IRanges

updated 15.1 years ago by Martin Morgan 25k • written 15.1 years ago by Noah Dowell ▴ 410

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1.3k

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rMAT rMAT

updated 15.5 years ago by Vincent J. Carey, Jr. 6.7k • written 15.5 years ago by Rodrigo Drummond ▴ 10

8 results • Page 1 of 1

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Comment: EuroBioC2023 abstract submission closing soon! by Jeremy • 0

Thanks for the reminder! If you're a Bioconductor user or developer, make sure to [tabs][1] submit your abstract by the deadline, Monday, A…

Comment: Mean variance curve troubleshoot filtering by gingergeiger22 • 0

Gordon, thank for your response. 'filterByExpr()' was marginally better. I can see high variability in samples within the groups from the M…

Comment: What is the importance of `--countReadPairs` in featureCounts on paired end data by rohitsatyam102 ▴ 20

Since I don't know which organism you are working on, I would recommend using the following: `-s 0` if library is unstranded `-C` Discard…

Comment: What is the importance of `--countReadPairs` in featureCounts on paired end data by rohitsatyam102 ▴ 20

Yes use this option. It is recommended for PE and if you don't use it you will observe nearly twice the number of counts in your results. H…

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

I edited the previous post. I meant to remove the estimateGLMRobustDisp line in the second snipper : ```` DGE_list_object <- estimateGLMR…

Votes

Comment: Comparing different method for DESEQ2

Answer: How do I fix an odd voom plot in a combined dataset?

Comment: How do I fix an odd voom plot in a combined dataset?

C: How does edgeR cpm function calculate log(CPM) values?

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