Bioconductor Rmat

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rMAT rMAT

10.9 years ago 周在威 ▴ 20

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825

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rMAT rMAT

12.0 years ago Paul Hatton ▴ 10

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rMAT rMAT

updated 14.5 years ago by Raphael Gottardo ▴ 40 • written 14.6 years ago by Larry Singh ▴ 20

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897

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rMAT rMAT

14.6 years ago Patrick Schorderet ▴ 50

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Preprocessing GUI rMAT Preprocessing GUI rMAT

14.6 years ago Patrick Schorderet ▴ 50

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994

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GUI rMAT GUI rMAT

updated 14.6 years ago by Wolfgang Huber ★ 13k • written 14.6 years ago by Patrick Schorderet ▴ 50

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1.2k

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Normalization Preprocessing rtracklayer IRanges rMAT Normalization Preprocessing IRanges

updated 15.0 years ago by Martin Morgan 25k • written 15.0 years ago by Noah Dowell ▴ 410

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1.3k

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rMAT rMAT

updated 15.4 years ago by Vincent J. Carey, Jr. 6.7k • written 15.4 years ago by Rodrigo Drummond ▴ 10

8 results • Page 1 of 1

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Comment: Crossover design with limma by gohafis752 • 0

Hi. Nowadays, treatment from [https://ways2well.com/blog/what-is-the-lowest-dose-of-progesterone-for-hrt][1] is gaining more and more popul…

Comment: What type of counts data to import for performing Isoform analysis in edgeR by mohammedtoufiq91 ▴ 10

@gordonsmyth I will re-run Salmon with the --numGibbsSamples=50 option. Thank you.

Comment: Differential Expression Genes as Independent Variables by Gordon Smyth 52k

Such an analysis cannot be done in limma. Sorry, I cannot tell you how to do it or even whether it is possible.

Comment: Differential Expression Genes as Independent Variables by abadgerw • 0

The data that is repeated is a quantitative metric of post-mortem pathology across multiple sections. Not all patients have the same number…

Answer: Crossover design with limma by Gordon Smyth 52k

Your experiment is somewhat more elaborate than a classical crossover design because of the period-specific baseline controls. The analyses…

Votes

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

Transcript-level differential expression using DESeq2

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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