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DESeq: residuals instead of read counts
RNASeq DESeq RNASeq DESeq
updated 14.9 years ago by ★ 3.8k • written 14.9 years ago by ▴ 10
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EdgeR - problems running estimateCRDisp
RNASeq edgeR RNASeq edgeR
15.0 years ago Davis McCarthy ▴ 260
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2
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1.4k
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EdgeR - problems running estimateCRDisp
RNASeq edgeR RNASeq edgeR
15.1 years ago • updated 15.0 years ago Gordon Smyth 53k
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1.4k
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EdgeR - problems running estimateCRDisp
RNASeq edgeR RNASeq edgeR
updated 15.1 years ago by 53k • written 15.1 years ago by ▴ 60
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1.7k
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Bioconductor 2.7 is released
BiocViews aCGH Transcription RNASeq miRNA Microarray Normalization Network Bayesian aCGH
15.1 years ago Martin Morgan 25k
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1.4k
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analysis of differential expression of small RNAs sequences
RNASeq DESeq RNASeq DESeq
updated 15.6 years ago by ★ 3.8k • written 15.6 years ago by ▴ 810
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1.3k
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RNAseq expression analysis using DESeq: technical replicates, paired samples
RNASeq DESeq RNASeq DESeq
15.6 years ago Simon Anders ★ 3.8k
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1.2k
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RNAseq expression analysis using DESeq: technical replicates, paired samples
RNASeq DESeq RNASeq DESeq
15.6 years ago Jinfeng Liu ▴ 10
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5
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1.6k
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variation between cells compared to samples
RNASeq RNASeq
updated 15.8 years ago by ★ 13k • written 15.8 years ago by ▴ 240
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5
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2.3k
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read coverage per transcript for RNASeq
RNASeq Coverage PROcess ShortRead RNASeq Coverage PROcess ShortRead
updated 16.2 years ago by 25k • written 16.2 years ago by ▴ 40
1,410 results • Page 29 of 29
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
Answer: Finding duplicated entries in GRangesList by Kevin Blighe ★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: DESeq2 on non-RNASeq counts data by Kevin Blighe ★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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