Showing : rnaseq • reset
0
votes
4
replies
1.5k
views
(no subject)
RNASeq Normalization GO DESeq RNASeq Normalization GO DESeq
updated 13.1 years ago by ★ 2.0k • written 13.1 years ago by ▴ 100
0
votes
0
replies
1.2k
views
DESeq - skewed MAplots and other problems
RNASeq Normalization GO DESeq RNASeq Normalization GO DESeq
13.1 years ago Michal Lulu ▴ 100
0
votes
2
replies
1.4k
views
RNAseq object
RNASeq DESeq easyRNASeq RNASeq DESeq easyRNASeq
updated 13.1 years ago by ★ 4.2k • written 13.1 years ago by ★ 13k
0
votes
0
replies
1.1k
views
Postdoc position available
RNASeq Genetics RNASeq Genetics
13.2 years ago Guest User ★ 13k
0
votes
2
replies
1.4k
views
easyRNASeq package: error when summarizing per gene
RNASeq Annotation Organism BSgenome BSgenome easyRNASeq RNASeq Annotation Organism
updated 13.2 years ago by ★ 1.2k • written 13.2 years ago by ★ 13k
0
votes
7
replies
3.5k
views
How to retrieve exon ID and gene ID from exon coordinates?
RNASeq DEXSeq RNASeq DEXSeq
updated 13.2 years ago by 68k • written 13.2 years ago by ▴ 340
0
votes
3
replies
1.2k
views
DESeq variance stabilization
RNASeq RNASeq
updated 13.2 years ago by ★ 13k • written 13.2 years ago by ★ 1.3k
0
votes
0
replies
1.8k
views
Post-Doc - Milan: miRNAs and non-coding RNAs identification from RNAseq data
Sequencing RNASeq miRNA Cancer Sequencing RNASeq miRNA Cancer
13.3 years ago mattia pelizzola ▴ 200
0
votes
1
reply
1.5k
views
Warnings with running easyRNASeq with easyRNASeq tutorial
RNASeq Annotation GUI Cancer BSgenome BSgenome easyRNASeq RNASeq Annotation GUI Cancer
updated 13.3 years ago by ★ 1.2k • written 13.3 years ago by ★ 2.0k
0
votes
0
replies
1.8k
views
edge R design matrix pairwise comparison at different time points after infection with replicates
RNASeq Normalization edgeR RNASeq Normalization edgeR
13.4 years ago Gordon Smyth 53k
0
votes
1
reply
1.6k
views
CQN Package
RNASeq cqn RNASeq cqn
updated 13.4 years ago by ★ 6.5k • written 13.4 years ago by ▴ 30
0
votes
6
replies
2.3k
views
design matrix edge R pairwise comparison at different time points after infection with replicates
RNASeq edgeR RNASeq edgeR
updated 13.4 years ago by 53k • written 13.4 years ago by ▴ 70
0
votes
7
replies
2.0k
views
edgeR: calcNormFactors question
RNASeq RNASeq
13.4 years ago gowtham ▴ 210
0
votes
1
reply
1.4k
views
BCV increases with an increasing counts per million in RNAseq (edgeR)
RNASeq Normalization edgeR RNASeq Normalization edgeR
13.4 years ago gowtham ▴ 210
0
votes
0
replies
1.4k
views
paired analysis in RNA Seq data using DESeq
RNASeq edgeR DESeq RNASeq edgeR DESeq
13.4 years ago Natasha ▴ 440
0
votes
1
reply
1.0k
views
Expt. design question on optimal number of replicates (in edgeR or elsewhere)
RNASeq Organism edgeR RNASeq Organism edgeR
updated 13.5 years ago by ▴ 210 • written 13.5 years ago by 53k
0
votes
0
replies
755
views
Expt. design question on optimal number of replicates (in edgeR or else where)
RNASeq Organism edgeR RNASeq Organism edgeR
13.5 years ago gowtham ▴ 210
0
votes
3
replies
1.1k
views
help with mapping statistics summary
RNASeq RNASeq
updated 13.5 years ago by 25k • written 13.5 years ago by ▴ 50
0
votes
10
replies
4.8k
views
edgeR outlier question
RNASeq edgeR RNASeq edgeR
updated 13.5 years ago by 53k • written 13.5 years ago by ▴ 340
0
votes
2
replies
3.1k
views
DESeq vs DEXSeq
RNASeq Annotation DESeq DEXSeq RNASeq Annotation DESeq DEXSeq
updated 13.7 years ago by ★ 3.8k • written 13.7 years ago by ▴ 280
0
votes
1
reply
2.0k
views
DeSeq Volcano plot- error
RNASeq DESeq RNASeq DESeq
updated 13.7 years ago by ★ 13k • written 13.7 years ago by ▴ 30
0
votes
3
replies
2.1k
views
cummeRbund package function diffData returns no rows for TSS features
RNASeq cummeRbund RNASeq cummeRbund
updated 13.7 years ago by ▴ 140 • written 13.7 years ago by ▴ 120
0
votes
0
replies
1.1k
views
cummeRbund package function diffData returns no rows for TSS features
RNASeq cummeRbund RNASeq cummeRbund
13.7 years ago Guest User ★ 13k
0
votes
1
reply
1.3k
views
How to combine different annotation (chromosomic, genic) when using easyRNASeq (was easyRNASeq error)
RNASeq Annotation Organism biomaRt easyRNASeq RNASeq Annotation Organism biomaRt
updated 13.7 years ago by ▴ 350 • written 13.7 years ago by ★ 1.2k
0
votes
3
replies
1.9k
views
how edgeR control outliers?
RNASeq edgeR RNASeq edgeR
updated 13.7 years ago by 53k • written 13.7 years ago by ▴ 60
0
votes
0
replies
1.0k
views
SNP calling pipeline help
RNASeq RNASeq
13.8 years ago Sunny Yu Liu ▴ 80
0
votes
2
replies
1.9k
views
number of genes for DESeq analysis
RNASeq RNASeq
updated 13.8 years ago by ★ 3.8k • written 13.8 years ago by ▴ 10
0
votes
2
replies
7.1k
views
gplots Heatmap
SNP Transcription Sequencing RNASeq miRNA Microarray Annotation Normalization GO Cancer
updated 13.8 years ago by ★ 13k • written 13.8 years ago by ▴ 10
0
votes
0
replies
1.3k
views
using easyRNASeq examples
RNASeq Annotation BSgenome convert biomaRt BSgenome IRanges DESeq easyRNASeq RNASeq
13.8 years ago delhomme@embl.de ★ 1.2k
0
votes
5
replies
1.9k
views
easyRNASeq - error reading single chromosome bam
RNASeq Alignment BSgenome BSgenome RNASeq Alignment BSgenome BSgenome
updated 13.8 years ago by ★ 1.2k • written 13.8 years ago by ▴ 380
0
votes
3
replies
3.8k
views
how edgeR control the outliers?
RNASeq edgeR RNASeq edgeR
updated 13.8 years ago by 53k • written 13.8 years ago by ▴ 60
0
votes
1
reply
937
views
DESeq mean,var
RNASeq GO DESeq RNASeq GO DESeq
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 50
0
votes
4
replies
3.1k
views
Using GTF gene annotation to build a GemomicRanges Object
RNASeq Annotation RNASeq Annotation
updated 14.0 years ago by ▴ 80 • written 14.0 years ago by ★ 13k
0
votes
3
replies
2.5k
views
RNAseq expression analysis using DESeq: technical replicates, paired samples
RNASeq DESeq RNASeq DESeq
updated 14.0 years ago by ★ 3.8k • written 14.0 years ago by ▴ 420
0
votes
1
reply
1.4k
views
Bioconductor Digest, Vol 102, Issue 29
RNASeq edgeR RNASeq edgeR
updated 14.2 years ago by ▴ 20 • written 14.2 years ago by ▴ 20
0
votes
2
replies
5.4k
views
edgeR: handling missing values with Quantile normalisation
RNASeq edgeR RNASeq edgeR
updated 14.2 years ago by ▴ 970 • written 14.2 years ago by ▴ 20
0
votes
0
replies
1.8k
views
[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq ChIPSeq Epigenetics Cancer chipseq SANTA RNASeq ChIPSeq Epigenetics Cancer SANTA
14.2 years ago stefano iacus ▴ 430
0
votes
8
replies
3.9k
views
views on Rle using GRanges object
RNASeq Coverage GO rtracklayer RNASeq Coverage GO rtracklayer
updated 14.3 years ago by 16k • written 14.3 years ago by ▴ 740
0
votes
1
reply
1.3k
views
DESeq multifactor GLM Error attributed to zero counts (coded as NA) in dataset?
RNASeq RNASeq
updated 14.3 years ago by ★ 13k • written 14.3 years ago by ▴ 10
3
votes
2
replies
3.4k
views
Nanostring ncounterdata - DESeq
RNASeq Normalization Preprocessing DESeq RNASeq Normalization Preprocessing DESeq
updated 14.3 years ago by ★ 3.8k • written 14.3 years ago by ▴ 20
0
votes
4
replies
1.8k
views
Array data vs. Next Gen with log 2 Fold Change
RNASeq Microarray limma RNASeq Microarray limma
updated 14.4 years ago by 53k • written 14.4 years ago by ▴ 560
0
votes
1
reply
2.1k
views
Log2 fold change single replicate RNA seq
RNASeq Microarray limma RNASeq Microarray limma
updated 14.4 years ago by ★ 7.2k • written 14.4 years ago by ▴ 560
0
votes
10
replies
2.6k
views
RNASeq: normalization issues
RNASeq Normalization edgeR RNASeq Normalization edgeR
updated 14.6 years ago by ▴ 70 • written 14.6 years ago by ▴ 80
0
votes
7
replies
2.3k
views
RNASeq: normalization issues
RNASeq RNASeq
updated 14.6 years ago by ★ 3.6k • written 14.6 years ago by ▴ 160
0
votes
0
replies
1.4k
views
RNA-Seq with multiple factors [was Informations about DESeq package]
RNASeq edgeR baySeq DESeq RNASeq edgeR baySeq DESeq
14.6 years ago Gordon Smyth 53k
0
votes
0
replies
763
views
Questions about package DESeq
RNASeq DESeq RNASeq DESeq
14.6 years ago Mr.B ▴ 10
0
votes
0
replies
791
views
Informations about DESeq package
RNASeq DESeq RNASeq DESeq
14.6 years ago Bruno Roman ▴ 10
0
votes
3
replies
1.8k
views
RNASeq, differential expression between group, and large variance within groups
RNASeq qPCR edgeR DESeq RNASeq qPCR edgeR DESeq
updated 14.7 years ago by ★ 6.0k • written 14.7 years ago by 53k
0
votes
8
replies
2.2k
views
Single nucleotide based RNAseq normalization with edgeR
Sequencing RNASeq Normalization edgeR Sequencing RNASeq Normalization edgeR
updated 14.8 years ago by ▴ 20 • written 14.8 years ago by 53k
0
votes
1
reply
1.7k
views
plotSmear() function in edgeR
RNASeq edgeR RNASeq edgeR
updated 14.8 years ago by ★ 1.1k • written 14.8 years ago by ▴ 10
1,410 results • Page 28 of 29
Recent ...
Replies
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Kevin Blighe ★ 4.0k
There are alternative explanations for why these samples are so similar. The similarity could result from low biological variability in gen…
Comment: Post translational modifications and phosphoproteomics in limpa? by james.eapen • 0
Thank you!
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by ATpoint ★ 5.0k
The donor effect is crystal clear, and absent in these suspicious samples. It strongly argues for a technical problem. If you really need s…
Answer: mzR-Rcpp compiler version issue by Laurent Gatto 1.6k
There are two issues here. First, a warning about mzR, that you can safely ignore. It tells you that mzR was compiled using a different …
Comment: Identifying differentially expressed genes in individual samples from a large co by jamie.gearing ▴ 60
Great. Yes, something descriptive is probably good enough, even if the p-values themselves are not so rigorous. Thanks very much Gordon!
Votes
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
Answer: Identifying differentially expressed genes in individual samples from a large co
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Awards • All
Scholar to Gordon Smyth 53k
Popular Question to shepherl 4.2k
Supporter to fabio.marroni • 0
Popular Question to Guido Hooiveld ★ 4.1k
Popular Question to James W. MacDonald 68k
Locations • All
The Cave, 181 Longwood Avenue, Boston, USA, just now
United States, 47 minutes ago
United States, 1 hour ago
United States, 2 hours ago
United States, 2 hours ago
Traffic: 485 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6