Bioconductor Rnaseqcomp

Showing : rnaseqcomp • reset

0

votes

3

replies

1.1k

views

rnaseqcomp

updated 20 months ago by Gordon Smyth 52k • written 20 months ago by kay2023 • 0

1

vote

1

reply

869

views

RNASeqData rnaseqcomp RNASeq

updated 24 months ago by ATpoint ★ 4.9k • written 24 months ago by jg0428 • 0

0

votes

0

replies

1.1k

views

RNAinteract rnaseqGene RNASeqRData rnaseqcomp

4.6 years ago Bogdan ▴ 670

3 results • Page 1 of 1

Recent ...

Replies

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k

Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…

Votes

Can NanoString data be analyzed using DESeq2?

Awards • All

Popular Question to Robert Castelo ★ 3.4k