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RNASeqRData
•
reset
1
vote
4
replies
943
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RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA
gene
RNASeqRData
edgeR
geneontology
21 months ago
faiza
• 0
1
vote
3
replies
750
views
What should I do with RNA-Seq data to get a gene that work?
find
RNASeqRData
updated 21 months ago by
ATpoint
★ 4.2k • written 21 months ago by
yuhang
• 0
1
vote
4
replies
1.6k
views
merge TPM values for same geneID
RNASeqRData
TPM
updated 22 months ago by
ATpoint
★ 4.2k • written 22 months ago by
prashali.bansal
▴ 10
0
votes
0
replies
514
views
how to create PHENO_DATA
RNASeq
RNASeqData
RNASeqRData
22 months ago
marymshahi2021
• 0
0
votes
1
reply
650
views
DeSeq2 timecourse analysis
RNAseqRData
DeSeq2
updated 2.3 years ago by
Michael Love
42k • written 2.3 years ago by
Hannah
• 0
0
votes
17
replies
3.5k
views
results(dds) error: couldn't find results. you should first run DESeq()
RNASeqRData
updated 2.4 years ago by
Michael Love
42k • written 2.4 years ago by
beslinail
• 0
1
vote
1
reply
847
views
edgeR for SDE analysis
RNASeqRData
edgeR
RNASeqR
RNASeqData
updated 2.4 years ago by
Gordon Smyth
51k • written 2.4 years ago by
vikycairoli
• 0
1
vote
2
replies
948
views
Is 100K genes too many to run ComBat_seq on?
RNASeqRData
combat_Seq
BatchEffect
2.8 years ago • updated 2.5 years ago
zeegzaag
• 0
0
votes
1
reply
950
views
Limma Voom Design and Contrast Matrix- Can my parameter also be a factor?
RNASeqRData
limma
RNASeq
RNASeqR
updated 3.3 years ago by
Gordon Smyth
51k • written 3.3 years ago by
Rita
• 0
2
votes
2
replies
2.9k
views
How to download KEGG pathways for list of enriched genes
RNASeqRData
GO
3.4 years ago
Wuschel
▴ 10
0
votes
0
replies
800
views
display .CT files in a BioC package
RNAinteract
rnaseqGene
RNASeqRData
rnaseqcomp
3.5 years ago
Bogdan
▴ 670
4
votes
4
replies
1.1k
views
DEseq2: working with unbalanced number of sample in tumor study?
Deseq2
RNASeqRData
unbalancedsamplesize
updated 2.2 years ago by
Michael Love
42k • written 3.5 years ago by
Cihat
• 0
1
vote
5
replies
2.2k
views
How can I use bioconductor and Deseq2 in linux ubuntu 18
RiboProfiling
DESeq2
Bioconductor
RNASeqRData
updated 21 months ago by
Kevin Blighe
★ 4.0k • written 3.5 years ago by
Taufiq
• 0
13 results • Page
1 of 1
Recent ...
Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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