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RNASeqRData
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1
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4
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251
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RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA
gene
RNASeqRData
edgeR
geneontology
3 months ago
faiza
• 0
1
vote
3
replies
210
views
What should I do with RNA-Seq data to get a gene that work?
find
RNASeqRData
updated 3 months ago by
ATpoint
★ 2.1k • written 3 months ago by
yuhang
• 0
0
votes
4
replies
342
views
merge TPM values for same geneID
RNASeqRData
TPM
updated 4 months ago by
ATpoint
★ 2.1k • written 4 months ago by
prashali.bansal
• 0
0
votes
0
replies
132
views
how to create PHENO_DATA
RNASeq
RNASeqData
RNASeqRData
4 months ago
marymshahi2021
• 0
0
votes
1
reply
264
views
DeSeq2 timecourse analysis
RNAseqRData
DeSeq2
updated 10 months ago by
Michael Love
39k • written 10 months ago by
Hannah
• 0
0
votes
17
replies
1.2k
views
results(dds) error: couldn't find results. you should first run DESeq()
RNASeqRData
updated 10 months ago by
Michael Love
39k • written 10 months ago by
beslinail
• 0
1
vote
1
reply
348
views
edgeR for SDE analysis
RNASeqRData
edgeR
RNASeqR
RNASeqData
updated 11 months ago by
Gordon Smyth
47k • written 11 months ago by
vikycairoli
• 0
1
vote
2
replies
451
views
Is 100K genes too many to run ComBat_seq on?
RNASeqRData
combat_Seq
BatchEffect
16 months ago • updated 12 months ago
zeegzaag
• 0
0
votes
1
reply
519
views
Limma Voom Design and Contrast Matrix- Can my parameter also be a factor?
RNASeqRData
limma
RNASeq
RNASeqR
updated 22 months ago by
Gordon Smyth
47k • written 22 months ago by
Rita
• 0
2
votes
2
replies
1.3k
views
How to download KEGG pathways for list of enriched genes
RNASeqRData
GO
23 months ago
Wuschel
▴ 10
0
votes
0
replies
378
views
display .CT files in a BioC package
RNAinteract
rnaseqGene
RNASeqRData
rnaseqcomp
24 months ago
Bogdan
▴ 660
4
votes
4
replies
632
views
DEseq2: working with unbalanced number of sample in tumor study?
Deseq2
RNASeqRData
unbalancedsamplesize
updated 8 months ago by
Michael Love
39k • written 24 months ago by
Cihat
• 0
1
vote
5
replies
1.2k
views
How can I use bioconductor and Deseq2 in linux ubuntu 18
RiboProfiling
DESeq2
Bioconductor
RNASeqRData
updated 3 months ago by
Kevin Blighe
3.7k • written 2.0 years ago by
Taufiq
• 0
13 results • Page
1 of 1
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Replies
Comment: mas5calls function doesn't work; mirna40cdf problem
by
Berna
• 0
Thank you for the information. I did not know that. Would you have a tip how I could proceed differently?
Comment: Correct use of Likelihood Ratio Test and LFC Shrinkage
by
ayabalbaa1990
• 0
Hi Michael, So I use this res_LRT <- results(dds_lrt) r2=lfcShrink(dds_lrt, coef=7, res=res_LRT) tu run lfcshrink with LRT, is that oko?…
Comment: Combat and dds Object
by
shaimaa
• 0
I used the combat-seq but the deseq complain as its not integer what should i do
Answer: Different summary() and results() values in DeSeq2
by
Basti
▴ 540
summary() tells you the number of genes with low counts, see independant filtering of results in the DESeq2 vignette : https://www.biocondu…
Comment: Atena package - error (new user)
by
beatriz.calvo
▴ 30
Hi Lalani, We have fixed the bug that lead to the error. The new version of the package (with the bug fixed) will be available in 24-48h. …
Votes
Answer: mas5calls function doesn't work; mirna40cdf problem
Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
A: How to translate FASTA file of DNA sequence to protein sequence using Biostrings
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