Bioconductor RNASeqRData

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microRNA gene RNASeqRData edgeR geneontology

2.4 years ago faiza • 0

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950

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find RNASeqRData

updated 2.4 years ago by ATpoint ★ 4.7k • written 2.4 years ago by yuhang • 0

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RNASeqRData TPM

updated 2.5 years ago by ATpoint ★ 4.7k • written 2.5 years ago by prashali.bansal ▴ 10

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635

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RNASeq RNASeqData RNASeqRData

2.5 years ago marymshahi2021 • 0

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825

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RNAseqRData DeSeq2

updated 3.0 years ago by Michael Love 43k • written 3.0 years ago by Hannah • 0

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4.2k

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RNASeqRData

updated 3.0 years ago by Michael Love 43k • written 3.0 years ago by beslinail • 0

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RNASeqRData edgeR RNASeqR RNASeqData

updated 3.1 years ago by Gordon Smyth 52k • written 3.1 years ago by vikycairoli • 0

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RNASeqRData combat_Seq BatchEffect

3.5 years ago • updated 3.2 years ago zeegzaag • 0

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RNASeqRData limma RNASeq RNASeqR

updated 4.0 years ago by Gordon Smyth 52k • written 4.0 years ago by Rita • 0

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3.4k

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RNASeqRData GO

4.1 years ago Wuschel ▴ 10

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964

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RNAinteract rnaseqGene RNASeqRData rnaseqcomp

4.1 years ago Bogdan ▴ 670

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1.4k

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Deseq2 RNASeqRData unbalancedsamplesize

updated 2.8 years ago by Michael Love 43k • written 4.1 years ago by Cihat • 0

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RiboProfiling DESeq2 Bioconductor RNASeqRData

updated 2.4 years ago by Kevin Blighe ★ 4.0k • written 4.1 years ago by Taufiq • 0

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Comment: Conumee with EPICv2 Segment function by zpingfeng • 0

I have the same issue too for the analysis lack of sample replicates. It was fine for the samples with replicates

Comment: Complex contrasts for between and within subject comparisons by wuwenhui2 • 0

@gordonsmyth Dear Dr. Smyth, in this design, I am interested to extract genes that have different expression profile at any of the time poi…

Comment: edgeR design between and within subjects by wuwenhui2 • 0

@luna Hi Aaron, Your explanation is very helpful. If having three time points instead of three cell types measured for each patient, usin…

Comment: Issue when attempting to use output from DECIPHER IDtaxa (pr2 V5) with dada2/phy by Daniel • 0

Two things: - PR2 version 5.0 and above have 9 levels and not 8 (up to version 4.14). So the code should be: > ranks.pr2 <- c("domain",…

Comment: Removing UTR from GTF for gene quantification by Michael Love 43k

Yes, we need to discourage tagging software packages arbitrarily on Bioconductor support site. This sends emails to the package maintainers…

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Comment: Identifying potentially associated gene set to drug response using GSVA

Answer: Limma - Complex 2-way multi-level contrast with paired samples

Comment: Can't post a question?

Answer: Limma - Complex 2-way multi-level contrast with paired samples

Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks

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