Bioconductor RNASeqRData

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790

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microRNA gene RNASeqRData edgeR geneontology

18 months ago faiza • 0

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655

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find RNASeqRData

updated 18 months ago by ATpoint ★ 4.0k • written 18 months ago by yuhang • 0

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1.4k

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RNASeqRData TPM

updated 18 months ago by ATpoint ★ 4.0k • written 19 months ago by prashali.bansal ▴ 10

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457

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RNASeq RNASeqData RNASeqRData

19 months ago marymshahi2021 • 0

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586

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RNAseqRData DeSeq2

updated 2.1 years ago by Michael Love 41k • written 2.1 years ago by Hannah • 0

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3.1k

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RNASeqRData

updated 2.1 years ago by Michael Love 41k • written 2.1 years ago by beslinail • 0

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776

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RNASeqRData edgeR RNASeqR RNASeqData

updated 2.2 years ago by Gordon Smyth 50k • written 2.2 years ago by vikycairoli • 0

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867

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RNASeqRData combat_Seq BatchEffect

2.6 years ago • updated 2.3 years ago zeegzaag • 0

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855

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RNASeqRData limma RNASeq RNASeqR

updated 3.1 years ago by Gordon Smyth 50k • written 3.1 years ago by Rita • 0

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2.6k

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RNASeqRData GO

3.2 years ago Wuschel ▴ 10

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727

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RNAinteract rnaseqGene RNASeqRData rnaseqcomp

3.2 years ago Bogdan ▴ 670

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1.1k

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Deseq2 RNASeqRData unbalancedsamplesize

updated 23 months ago by Michael Love 41k • written 3.2 years ago by Cihat • 0

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2.0k

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RiboProfiling DESeq2 Bioconductor RNASeqRData

updated 18 months ago by Kevin Blighe ★ 3.9k • written 3.2 years ago by Taufiq • 0

13 results • Page 1 of 1

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10

Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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Scholar to Robert Castelo ★ 3.2k

Popular Question to James W. MacDonald 65k