Biostar RNASeqRData

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141

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RNASeqRData combat_Seq BatchEffect

3 months ago • updated 4 days ago zeegzaag • 0

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287

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RNASeqRData limma RNASeq RNASeqR

updated 9 months ago by Gordon Smyth 44k • written 9 months ago by Rita • 0

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415

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RNASeqRData GO

10 months ago Wuschel ▴ 10

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172

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RNAinteract rnaseqGene RNASeqRData rnaseqcomp

11 months ago Bogdan ▴ 620

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239

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Deseq2 RNASeqRData unbalancedsamplesize

11 months ago Cihat • 0

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441

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RiboProfiling DESeq2 Bioconductor RNASeqRData

updated 11 months ago by Kevin Blighe 3.4k • written 11 months ago by Taufiq • 0

6 results • Page 1 of 1

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Comment: Cannot install Phyloseq and dada2 by Guido Hooiveld ★ 3.2k

Did you notice this message:? Installation paths not writeable, unable to update packages path: C:/Program Files/R/R-4.0.0/libra…

Comment: Use of shrunken LFCs to address questions about the distribution of LFCs between by i.sudbery ▴ 20

Thanks Mike. I might have a play with stratifying by expression level. One reason I wasn't looking at gene set testing is that its the nul…

Answer: submitting a BSgenome package by deisianyufg • 0

From my Github repository. I am sorry, I thought the package was already released and realize now that is still only in my github reposito…

Comment: PlotPCA in DESeq2 doesn't produce exactly the same result as prcomp by swbarnes2 ▴ 970

Is the one plot a mirror image of the other?

Answer: Use of shrunken LFCs to address questions about the distribution of LFCs between by Michael Love 35k

hi Ian, Great question, and good to be concerned that the mean expression may be a confounder for either analysis, Why not stratify your…

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Answer: Use of shrunken LFCs to address questions about the distribution of LFCs between

Answer: DiffBind dba.count Error in if (sum(tokeep) < length(tokeep))

Comment: submitting a BSgenome package

Answer: rlog vs vst for outlier identification

Answer: DESeq2 median of ratios normalization for signature score calculation

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