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Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
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Yes, you can use `limma`.
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You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
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If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
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Please don't add to posts from two years ago. Instead make a new post.
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In that case, probably easiest to subset to the groups being compared.
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