Bioconductor Salmon rna seq

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1.1k

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deseq2 salmon rna seq salmon

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by danalvoronov ▴ 10

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2.1k

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salmon rna seq deseq2

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by Bob • 0

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1.4k

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deseq2 gsea tpm rnaseq salmon rna seq

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by leo_CD • 0

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1.7k

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tximport salmon rna seq de novo

updated 6.4 years ago by James W. MacDonald 67k • written 6.4 years ago by RMRG ▴ 10

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2.1k

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drimseq stageR dtu salmon rna seq

updated 6.5 years ago by Koen Van den Berge ▴ 180 • written 6.5 years ago by fiona.dick91 ▴ 60

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1.0k

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salmon rna seq tximport ruv-seq deseq2

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by mad6kj • 0

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2.8k

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sleuth R salmon rna seq salmon

7.2 years ago Walter F. Baumann ▴ 10

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1.3k

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salmon rna seq

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by tanyabioinfo ▴ 20

8 results • Page 1 of 1

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Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k

Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…

Comment: Sample-specific methylation values using QSEA by User3088 • 0

Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…

Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

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Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

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Teacher to Axel Klenk ★ 1.1k