Showing : salmon rna seq • reset
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DEseq2 with different fastq read numbers after salmon
deseq2 salmon rna seq salmon
updated 6.8 years ago by 43k • written 6.8 years ago by ▴ 10
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salmon output file for differential expression analysis
salmon rna seq deseq2
updated 6.9 years ago by 43k • written 6.9 years ago by • 0
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1.6k
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Using TPM of a specific isoform as a phenotype for gene set enrichment analysis
deseq2 gsea tpm rnaseq salmon rna seq
updated 6.9 years ago by 43k • written 6.9 years ago by • 0
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tximport and de novo transcriptome
tximport salmon rna seq de novo
updated 7.0 years ago by 68k • written 7.0 years ago by ▴ 10
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9
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2.5k
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stageR NA in getAdjustedPValues() (method=dtu)
drimseq stageR dtu salmon rna seq
updated 7.2 years ago by ▴ 180 • written 7.2 years ago by ▴ 60
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1.2k
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Post-processing RNA-Seq after tximport
salmon rna seq tximport ruv-seq deseq2
updated 7.4 years ago by 43k • written 7.4 years ago by • 0
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Using sluth with Salmon data, error while sleuth_prep
sleuth R salmon rna seq salmon
7.9 years ago Walter F. Baumann ▴ 10
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Salmon RNA Seq
salmon rna seq
updated 7.9 years ago by 43k • written 7.9 years ago by ▴ 30
8 results • Page 1 of 1
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Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0
Thank you so much! https://www.nature.com/articles/s41467-021-25960-2
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k
I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0
Hello again @gordonsmyth, I've now applied the analysis using a more detailed annotation of cell types/clusters, which includes about 100 …
Answer: Sharing a collection of datasets in ExperimentHub by shepherl 4.2k
107 packages would be a lot! It is certainly possible (and recommended) to implement one package that utilizes ExperimentHub for controlli…
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
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Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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