Biostar Dtu

Showing : dtu • reset

votes

replies

143

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DESeq2 DRIMSeq dtu RNASeq

15 days ago • updated 12 days ago sbcn ▴ 70

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320

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edgeR DEXSeq IsoformSwitchAnalyzeR DTU

updated 6 weeks ago by k.vitting.seerup ▴ 100 • written 3 months ago by jbono ▴ 10

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238

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DRIMSeq R DTU technical replicates deseq2

updated 12 months ago by Kevin Blighe 3.2k • written 12 months ago by poecile.pal • 0

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472

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RATs RNA-Seq Isoforms DTU expression

updated 2.1 years ago by fruce_ki ▴ 20 • written 2.1 years ago by UserAnonyme • 0

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589

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 2.3 years ago by Michael Love 33k • written 2.5 years ago by fiona.dick91 ▴ 10

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747

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tximport dtu salmon TPM rnaseqDTU

updated 2.3 years ago by Michael Love 33k • written 2.3 years ago by fiona.dick91 ▴ 10

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690

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rnaseqDTU dtu

updated 2.5 years ago by Michael Love 33k • written 2.5 years ago by rbenel ▴ 20

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449

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DTU DRIMSeq rnaseqDTU

updated 2.5 years ago by Michael Love 33k • written 2.5 years ago by fiona.dick91 ▴ 10

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650

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drimseq stageR dtu salmon rna seq

updated 3.0 years ago by Koen Van den Berge ▴ 180 • written 3.0 years ago by fiona.dick91 ▴ 10

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819

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drimseq DTU

updated 4.0 years ago by Martin Morgan 25k • written 4.0 years ago by somseeprags ▴ 10

10 results • Page 1 of 1

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Comment: featureCounts - paired-end data by Yanfang • 0

Hey Wei shi, May I ask you something related to featureCounts? I have only paired end reads (RNAseq) mapping to its genome by bowtie2, an…

Comment: WGCNA adjust p value by Kevin Blighe 3.2k

Cross-posted: https://www.biostars.org/p/9482927/

Comment: Unique GPos taking into account mcols by Marcel Ramos 540

Hi @maltethodberg We currently do not have a method that does this. Perhaps a `duplicated` method is appropriate but I am not the develop…

Comment: What are these genes ? [How to get Ensembl IDs for them] by abf ▴ 30

Mouse genes are not typically all capitals, but I was able to find a reference to a mouse gene in NCBI to [CH36-217G15][1]. Maybe this is …

Comment: Apparent Ensembl - Entrez gene mis-match in org.Mm.eg.db. by abf ▴ 30

I should note that when I query org.Mm.eg.db using the gene Symbols associated with my differential expression data I find a 1:1 correspond…

Votes

A: Normalized counts of DESeq2 affected by design formula?

A: Finding orthologous human/mouse ENSEMBL IDs

Comment: What are these genes ? [How to get Ensembl IDs for them]

Answer: What lfcSE is dependent upon?

Comment: P value and Adj. P value showing N/A

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