Biostar Dtu

Showing : dtu • reset

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120

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DTU DEXSeq RNADTU

5 months ago • updated 4 months ago Nirad • 0

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316

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DESeq2 DRIMSeq dtu RNASeq

6 months ago sbcn ▴ 70

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524

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edgeR DEXSeq IsoformSwitchAnalyzeR DTU

updated 7 months ago by k.vitting.seerup ▴ 100 • written 9 months ago by jbono ▴ 10

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345

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DRIMSeq R DTU technical replicates deseq2

updated 18 months ago by Kevin Blighe 3.4k • written 18 months ago by poecile.pal • 0

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642

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RATs RNA-Seq Isoforms DTU expression

updated 2.5 years ago by fruce_ki ▴ 20 • written 2.5 years ago by UserAnonyme • 0

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701

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 2.7 years ago by Michael Love 35k • written 3.0 years ago by fiona.dick91 ▴ 10

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987

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tximport dtu salmon TPM rnaseqDTU

updated 2.8 years ago by Michael Love 35k • written 2.8 years ago by fiona.dick91 ▴ 10

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884

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rnaseqDTU dtu

updated 3.0 years ago by Michael Love 35k • written 3.0 years ago by rbenel ▴ 20

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555

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DTU DRIMSeq rnaseqDTU

updated 3.0 years ago by Michael Love 35k • written 3.0 years ago by fiona.dick91 ▴ 10

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817

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drimseq stageR dtu salmon rna seq

updated 3.5 years ago by Koen Van den Berge ▴ 180 • written 3.5 years ago by fiona.dick91 ▴ 10

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880

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drimseq DTU

updated 4.5 years ago by Martin Morgan 25k • written 4.5 years ago by somseeprags ▴ 10

11 results • Page 1 of 1

Recent ...

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Comment: Trying to follow a gene set analyisis in R by Michael Love 35k

It looks like you only have a single sample.

Comment: Trying to follow a gene set analyisis in R by leonardorosas2001 • 0

I get the following > design = model.matrix(~ es$condition) > design (Intercept) es$conditiondex4 attr(,"assign") [1] 0 1 attr(,"co…

Comment: How to use subjunc for differential splicing analysis? by Yang Liao ▴ 280

Annotation to the *subjunc* aligner helps the aligner to better map the reads. The aligner generates BAM files, which contains mapped reads…

Answer: universalmotif, question about enrich_motifs function and number of hits returne by btremblay ▴ 30

Hi, After doing some digging I've isolated the issue to being related to the threshold calculation which you request with the `threshold…

Answer: DE analysis model matrix for paired samples by Michael Love 35k

Agree with swbarnes2. It just seems like the condition effect is very small. Also I'd double check the metadata. Sometimes samples are swap…

Votes

Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6

Answer: How to use subjunc for differential splicing analysis?

Answer: catchKallisto results are not counts

A: What does the relative-log expression normalization mean in the deseq2 wrapper f

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