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stageR
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0
votes
10
replies
2.3k
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Two treatments, one control
DESeq2
stageR
19 months ago
alephreish
• 0
0
votes
2
replies
904
views
Swimming downstream: transcript fold changes
DEXSeq
stageR
2.3 years ago
jbono
▴ 10
0
votes
1
reply
1.0k
views
stageR p-adj values of zero
stageR
updated 4.4 years ago by
Koen Van den Berge
▴ 180 • written 4.4 years ago by
giwa.ao
• 0
0
votes
1
reply
1.4k
views
stageR with input from DRIMSeq
DRIMSeq
stageR
updated 7.0 years ago by
Koen Van den Berge
▴ 180 • written 7.0 years ago by
sdvie
• 0
2
votes
4
replies
2.3k
views
stageR: Error in stageWiseAdjustment
stageR
rnaseqDTU
DRIMSeq
DEXSeq
7.1 years ago
d-joester
▴ 20
4
votes
4
replies
1.9k
views
Correct use of Nested/Stage-wise testing with limma/stageR for 3-group design.
limma
stageR
decideTests
updated 7.1 years ago by
Koen Van den Berge
▴ 180 • written 7.1 years ago by
maltethodberg
▴ 180
0
votes
3
replies
1.7k
views
Post-hoc filtering on the standard deviation in proportions
drimseq
rnaseqdtu
stager
updated 7.2 years ago by
Michael Love
43k • written 7.2 years ago by
Jack.Hearn
• 0
1
vote
5
replies
2.3k
views
Plotting Expression of Differential Transcripts plotDEXseq
DEXSeq
StageR
rnaseqDTU
updated 7.3 years ago by
Michael Love
43k • written 7.4 years ago by
rbenel
▴ 50
2
votes
9
replies
2.8k
views
stageR NA in getAdjustedPValues() (method=dtu)
drimseq
stageR
dtu
salmon rna seq
updated 7.6 years ago by
Koen Van den Berge
▴ 180 • written 7.6 years ago by
fiona.dick91
▴ 60
9 results • Page
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Comment: Question on processing compound protein groups in limpa
by
JKim
• 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa
by
Gordon Smyth
53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input
by
Gordon Smyth
53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2
by
a2a2hset32aa
• 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts
by
a2a2hset32aa
• 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
Votes
Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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