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salmon rna seq
•
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3
votes
3
replies
2.5k
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Using sluth with Salmon data, error while sleuth_prep
sleuth
R
salmon rna seq
salmon
6.5 years ago
Walter F. Baumann
▴ 10
2
votes
9
replies
1.8k
views
stageR NA in getAdjustedPValues() (method=dtu)
drimseq
stageR
dtu
salmon rna seq
updated 5.8 years ago by
Koen Van den Berge
▴ 180 • written 5.8 years ago by
fiona.dick91
▴ 60
0
votes
5
replies
1.7k
views
salmon output file for differential expression analysis
salmon rna seq
deseq2
updated 5.5 years ago by
Michael Love
41k • written 5.5 years ago by
Bob
• 0
3
votes
4
replies
1.4k
views
tximport and de novo transcriptome
tximport
salmon rna seq
de novo
updated 5.6 years ago by
James W. MacDonald
65k • written 5.6 years ago by
RMRG
▴ 10
0
votes
1
reply
1.2k
views
Using TPM of a specific isoform as a phenotype for gene set enrichment analysis
deseq2
gsea
tpm
rnaseq
salmon rna seq
updated 5.5 years ago by
Michael Love
41k • written 5.5 years ago by
leo_CD
• 0
0
votes
1
reply
1.1k
views
Salmon RNA Seq
salmon rna seq
updated 6.5 years ago by
Michael Love
41k • written 6.5 years ago by
tanyabioinfo
▴ 20
1
vote
1
reply
909
views
Post-processing RNA-Seq after tximport
salmon rna seq
tximport
ruv-seq
deseq2
updated 6.0 years ago by
Michael Love
41k • written 6.0 years ago by
mad6kj
• 0
1
vote
1
reply
889
views
DEseq2 with different fastq read numbers after salmon
deseq2
salmon rna seq
salmon
updated 5.4 years ago by
Michael Love
41k • written 5.4 years ago by
danalvoronov
▴ 10
8 results • Page
1 of 1
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Comment: fgsea significant result
by
Chris
• 0
Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…
Answer: Handling multiple differential expression comparisons
by
Michael Love
41k
It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…
Votes
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
package goseq seems to be not available on the latest version of R
Print Differentially Expressed Exons From Dexseq Results
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