Bioconductor Samples

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samples rlog DESeq2

updated 2.5 years ago by Michael Love 42k • written 2.5 years ago by rafaelsolersanblas ▴ 50

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edger normalization samples comparisons

updated 6.6 years ago by Gordon Smyth 50k • written 6.6 years ago by roser.navarro • 0

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R deseq2 Paired Samples

updated 5.2 years ago by Michael Love 42k • written 5.2 years ago by m.wekking • 0

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samples sampleNumbers DESeq2

written 2.0 years ago by Lidia • 0

4 results • Page 1 of 1

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Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k

The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.

Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k

From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …

Comment: deseq2 results by ATpoint ★ 4.1k

> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…

Comment: Extremely small p-values using Limma for proteomic data by ATpoint ★ 4.1k

It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …

Votes

A: Volcanoplot with limma - RAW P-values or Adj.P-Values

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: minfi latest update for EPIC V2 chip

A: Error in DESeqDataSet : some values in assay are not integers

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Scholar to Robert Castelo ★ 3.3k

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