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sangerseqr
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Sequencing database tool in R: tracking Sanger and NGS of large-scale directed evolution projects
rmysql
fastq
seqinr
ngs
sangerseqr
6.1 years ago
JoeMG
• 0
0
votes
1
reply
1.8k
views
write ab1 files
sangerseqr
sequencing
abi
6.7 years ago
tmolosh
• 0
0
votes
0
replies
953
views
sangerseqR::read.abif reads float data incorrectly on little-endian systems
sangerseqR
bug
7.0 years ago
brendan.furneaux
▴ 10
1
vote
1
reply
1.6k
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Extracting information from .ab1 files
ab1
sangerseqR
updated 9.4 years ago by
aaron.l.statham
▴ 10 • written 9.4 years ago by
anuragm
• 0
0
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2
replies
1.7k
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How do I extract data from a .ab1 file ?
ab1
sequence
sangerseqR
updated 9.4 years ago by
aaron.l.statham
▴ 10 • written 9.5 years ago by
anuragm
• 0
5 results • Page
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Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
by
James W. MacDonald
66k
Yes, you can use `limma`.
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
66k
In that case, probably easiest to subset to the groups being compared.
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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