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runUMAP scater Matrix

updated 9 weeks ago by Hervé Pagès 16k • written 5 months ago by inzirio ▴ 10

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scuttle scater

updated 8 months ago by ATpoint ★ 4.1k • written 8 months ago by Abbi Edwards • 0

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plotHeatmap scater

10 months ago Alina • 0

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scater runPCA

updated 6 weeks ago by alan.ocallaghan ▴ 160 • written 6 weeks ago by Najla Abassi • 0

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updated 3 months ago by alan.ocallaghan ▴ 160 • written 3 months ago by Dario Strbenac ★ 1.5k

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scater

updated 3 months ago by alan.ocallaghan ▴ 160 • written 3 months ago by Dario Strbenac ★ 1.5k

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scran bluster scater scuttle

updated 6 weeks ago by ATpoint ★ 4.1k • written 6 weeks ago by Dario Strbenac ★ 1.5k

7 results • Page 1 of 1

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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by gene_bioconductor ▴ 10

Thanks for your thoughtful and detailed comment, Gordon

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

I looked into the genomic distributions. Please see the screenshot attatched ![ distrubution for female loci, boot1 and boot2][1] how do …

Answer: How to save the DEXSeq results by Michael Love 41k

If you look at the output here: https://bioconductor.org/packages/release/bioc/vignettes/DEXSeq/inst/doc/DEXSeq.html#4_Testing_for_differe…

Answer: Method to find pathways different between 2 groups by Robert Castelo ★ 3.3k

Hi, regarding how could you combine the result from each tool, one option is using a so-called "ensembl method", for instance, the package …

Answer: Couldn't connect to server while using "pathways" by James W. MacDonald 65k

As ATpoint already noted, you should proceed from the assumption that your audience knows nothing about what you are doing, and provide eno…

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Answer: Method to find pathways different between 2 groups

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: Method to find pathways different between 2 groups

Comment: Trying to use enrichGO

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