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seqlogo
•
reset
1
vote
4
replies
897
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Error of PWM not colsum to 1 from package DiffLogo or seqLogo
seqLogo
DiffLogo
20 months ago • updated 19 months ago
zhxiaokang
▴ 20
0
votes
1
reply
1.2k
views
PWM with columns that add up to 1
biostrings
seqlogo
pwm
updated 7.5 years ago by
Marcel Ramos
690 • written 7.5 years ago by
clausdkuhn
• 0
0
votes
5
replies
1.5k
views
Plotting protein position weighted matrices in seqLogo and DiffLogo
seqlogo
DiffLogo
updated 7.7 years ago by
mgledi
• 0 • written 7.8 years ago by
jeffb
• 0
0
votes
0
replies
779
views
Change chars ACGT to ACGU in seqLogo
seqLogo
seqLogo
10.4 years ago
Fabrice Tourre
▴ 970
0
votes
0
replies
789
views
cosmo for particular sequences
seqLogo
seqLogo
11.6 years ago
Guest User
★ 13k
0
votes
0
replies
1.2k
views
seqLogo package: sequence logo graph with background frequency?
seqLogo
seqLogo
12.4 years ago
Tim Smith
★ 1.1k
0
votes
3
replies
2.4k
views
Drawing multiple sequence logos with seqLogo?
graph
seqLogo
graph
seqLogo
13.6 years ago
Nenad Bartonicek
▴ 60
7 results • Page
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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Gordon Smyth
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Chris
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