Showing : shortread • reset
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ShortRead qa() error: Error in density.default(qscore) : 'x' contains missing values
PROcess ShortRead PROcess ShortRead
updated 12.0 years ago by 25k • written 12.0 years ago by ▴ 300
0
votes
5
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2.0k
views
Finding my un-counted reads
Sequencing rtracklayer ShortRead GenomicRanges Sequencing rtracklayer ShortRead
updated 12.2 years ago by ★ 6.8k • written 12.2 years ago by ▴ 300
0
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3
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2.6k
views
bioc package installation problem
ShortRead BiocInstaller ShortRead BiocInstaller
updated 12.6 years ago by ★ 8.2k • written 12.6 years ago by ▴ 680
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0
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1.4k
views
Sorry for cross post: Trouble creating ShortReadQ object and using writeFastq
Preprocessing ShortRead Preprocessing ShortRead
12.7 years ago Noah Dowell ▴ 410
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3
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3.2k
views
Trouble creating a ShortReadQ object and using writeFastq
Preprocessing ShortRead Preprocessing ShortRead
updated 12.7 years ago by 25k • written 12.7 years ago by ▴ 410
0
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3
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7.3k
views
readFasta and gzipped FASTA files
ShortRead ShortRead
updated 12.7 years ago by 25k • written 12.7 years ago by ▴ 310
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3
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3.1k
views
readFastq, writeFastq, compressed files and unix pipes.
ShortRead ShortRead
updated 12.9 years ago by 25k • written 12.9 years ago by ▴ 310
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0
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1.0k
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readAligned with bowtie2 input
Alignment Cancer ShortRead Alignment Cancer ShortRead
12.9 years ago Martin Morgan 25k
0
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0
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996
views
readAligned with bowtie2 input
Alignment ShortRead Alignment ShortRead
12.9 years ago Maria Dermit ▴ 10
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2
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1.5k
views
FastqSampler sort by ID
ShortRead ShortRead
updated 13.0 years ago by 25k • written 13.0 years ago by ▴ 390
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4
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1.3k
views
how to get the quality score system information from the reads
ShortRead ShortRead
updated 13.0 years ago by 25k • written 13.0 years ago by ★ 2.0k
0
votes
1
reply
1.3k
views
trimTails function in ShortRead package give different results on the same input
Sequencing ShortRead Sequencing ShortRead
updated 13.1 years ago by 25k • written 13.1 years ago by ▴ 10
0
votes
1
reply
1.0k
views
how to plot quality report
ShortRead ShortRead
updated 13.2 years ago by 25k • written 13.2 years ago by ★ 2.0k
0
votes
1
reply
1.0k
views
ShortRead package
ShortRead ShortRead
updated 13.3 years ago by 25k • written 13.3 years ago by ▴ 260
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1
reply
1.0k
views
Cannot call ShortRead package FastqSampler from Linux
ShortRead ShortRead
updated 13.4 years ago by 25k • written 13.4 years ago by ▴ 10
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0
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854
views
report a possible bug of
Cancer ShortRead Cancer ShortRead
13.7 years ago Martin Morgan 25k
0
votes
1
reply
823
views
report a possible bug of
ShortRead ShortRead
updated 13.7 years ago by 25k • written 13.7 years ago by ★ 2.0k
0
votes
2
replies
2.2k
views
Rsamtools installation error
ShortRead Rsamtools ShortRead Rsamtools
updated 13.7 years ago by 25k • written 13.7 years ago by ▴ 60
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votes
1
reply
1.2k
views
remove empty short read after using trimEnds
ShortRead ShortRead
updated 13.9 years ago by 25k • written 13.9 years ago by ▴ 40
0
votes
11
replies
3.2k
views
NucleR: processReads/solveUserSEW0 - Error
IRanges ShortRead nucleR IRanges ShortRead nucleR
14.0 years ago Stefanie Ververs ▴ 70
0
votes
1
reply
1.4k
views
how to use writeFASTA
ShortRead ShortRead
updated 14.0 years ago by 25k • written 14.0 years ago by ★ 2.0k
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0
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1.3k
views
Problem when I install shortread
ShortRead ShortRead
14.1 years ago Wei Wu ▴ 10
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5
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1.9k
views
ShortRead error when reading BAM file
ShortRead ShortRead
updated 14.1 years ago by 25k • written 14.1 years ago by ▴ 650
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1
reply
1.5k
views
shortread readAligned with BWA
GO ShortRead GO ShortRead
updated 14.2 years ago by 25k • written 14.2 years ago by ▴ 280
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2
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1.5k
views
Error loading ShortRead
ShortRead ShortRead
updated 14.5 years ago by 25k • written 14.5 years ago by ▴ 500
0
votes
1
reply
1.2k
views
A question about ShortRead_1.8.2.tar.gz.
ShortRead ShortRead
updated 14.8 years ago by 25k • written 14.8 years ago by ★ 8.2k
0
votes
1
reply
1.1k
views
A question about ShortRead_1.8.2.tar.gz.
ShortRead ShortRead
updated 14.8 years ago by ★ 8.2k • written 14.8 years ago by ▴ 10
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2
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1.6k
views
mismatch & replacement
ShortRead ShortRead
updated 15.0 years ago by ▴ 590 • written 15.0 years ago by ▴ 90
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3
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1.5k
views
Problem installing Rsamtools and ShortRead under Fedora 10.
ShortRead Rsamtools ShortRead Rsamtools
updated 15.1 years ago by 6.7k • written 15.1 years ago by ▴ 50
0
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1
reply
1.3k
views
ShortRead for sequencing data quality assessment
Sequencing ShortRead Sequencing ShortRead
updated 15.1 years ago by ★ 6.8k • written 15.1 years ago by ▴ 360
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1
reply
1.3k
views
ShortRead qa() for BAM files?
Coverage Alignment ShortRead Coverage Alignment ShortRead
updated 15.1 years ago by 25k • written 15.1 years ago by ▴ 260
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4
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1.8k
views
ShortRead for sequencing data quality assessment
Sequencing ShortRead Sequencing ShortRead
15.1 years ago heyi xiao ▴ 360
0
votes
4
replies
1.6k
views
fastq upload time
ShortRead ShortRead
updated 15.1 years ago by 21k • written 15.1 years ago by ▴ 90
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3
replies
1.6k
views
ShortRead QA
Sequencing ShortRead Sequencing ShortRead
updated 15.3 years ago by 25k • written 15.3 years ago by ▴ 650
0
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3
replies
2.4k
views
Error installing Rsamtools
ShortRead Rsamtools ShortRead Rsamtools
updated 15.4 years ago by 25k • written 15.4 years ago by ★ 1.3k
0
votes
1
reply
1.2k
views
ShortRead information
ShortRead ShortRead
updated 15.4 years ago by 25k • written 15.4 years ago by ▴ 10
0
votes
1
reply
951
views
Typo in ?FastqQuality help page?
ShortRead ShortRead
updated 15.5 years ago by 25k • written 15.5 years ago by ▴ 950
0
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2
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1.3k
views
ShortRead with BAM
ShortRead ShortRead
updated 15.5 years ago by 68k • written 15.5 years ago by ▴ 210
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1
reply
1.2k
views
Shortread and filtering of duplicate reads
ShortRead ShortRead
updated 15.8 years ago by 25k • written 15.8 years ago by ▴ 50
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2
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1.2k
views
ShortRead internal: too many 'snap' entries
ShortRead ShortRead
updated 15.8 years ago by 25k • written 15.8 years ago by ▴ 160
0
votes
1
reply
998
views
possible bug in extendReads() in package chipseq
Alignment ShortRead Alignment ShortRead
updated 16.0 years ago by 25k • written 16.0 years ago by ▴ 40
0
votes
2
replies
1.4k
views
pileup function in ShortRead package
Alignment ShortRead Alignment ShortRead
updated 16.1 years ago by 25k • written 16.1 years ago by ▴ 40
0
votes
5
replies
2.3k
views
read coverage per transcript for RNASeq
RNASeq Coverage PROcess ShortRead RNASeq Coverage PROcess ShortRead
updated 16.2 years ago by 25k • written 16.2 years ago by ▴ 40
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0
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1.1k
views
Problems reading multiple MAQ map files with ShortRead ReadAligned
ShortRead charm ShortRead charm
16.6 years ago David Rossell ▴ 100
0
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1
reply
1.1k
views
Problems reading multiple MAQ map files with ShortRead ReadAligned
Cancer PROcess ShortRead charm Cancer PROcess ShortRead charm
16.6 years ago Martin Morgan 25k
0
votes
1
reply
956
views
Vignette for ShortRead
ShortRead ShortRead
updated 17.3 years ago by 25k • written 17.3 years ago by ▴ 330
96 results • Page 2 of 2
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Comment: "Watched Tags" are being erased rather than updated by dipakosikotes • 0
Possibly a combination: some change in the forum software that affects some accounts/configurations but not all [unblocked games][1] […
Answer: EuroBioC2023 abstract submission is open! by Hao • 0
It's obvious that the blogger hought on details. It is not only easy to read but also makes the content more rich and interesting.[1v1 …
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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