Bioconductor Sim

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PhenoGeneRanker BSgenome.Osativa.MSU.MSU7 mouse.db0 SIM

11 months ago Abu 0

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2.6k

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SIM pathview SIM pathview

11.9 years ago Luo Weijun ★ 1.6k

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1.5k

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probe affy oligo SIM farms probe affy oligo SIM farms

12.2 years ago Djork Clevert ▴ 210

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4.2k

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Pathways graph PROcess SIM gage pathview Pathways graph PROcess SIM gage pathview

updated 12.5 years ago by Ed ▴ 230 • written 12.5 years ago by Luo Weijun ★ 1.6k

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1.3k

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SNP Annotation probe annotate SIM SNP Annotation probe annotate SIM

13.2 years ago Guest User ★ 13k

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1.9k

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Pathways Organism SIM KEGGgraph Pathways Organism SIM KEGGgraph

updated 16.2 years ago by Marc Carlson ★ 7.2k • written 16.2 years ago by Fraser Sim ▴ 270

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2.2k

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Rgraphviz SIM Rgraphviz SIM

updated 16.8 years ago by Patrick Aboyoun ★ 1.6k • written 16.8 years ago by ravi ▴ 130

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2.4k

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Rgraphviz SIM Rgraphviz SIM

updated 16.9 years ago by Martin Morgan 25k • written 16.9 years ago by Sim, Fraser ▴ 350

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1.9k

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genefilter affy limma GeneSpring affylmGUI GLAD SIM genefilter affy limma GeneSpring

17.6 years ago Mark Cowley ▴ 400

9 results • Page 1 of 1

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Comment: Chip Seq Analysis of RNA Polymerase 2 by Tikaaaq2c • 0

Without proper scaling or an enrichment check , Pol 2 peaks can appear flat against the background. If the data remains noisy, you might w…

Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by Tikaaaq2c • 0

Organizing complex transcripts requires the same discipline as managing a digital library on a learning platform. Many researchers use a [S…

Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0

In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …

Votes

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2

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