Bioconductor Sim

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SIM pathview SIM pathview

10.9 years ago Luo Weijun ★ 1.6k

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probe affy oligo SIM farms probe affy oligo SIM farms

11.1 years ago Djork Clevert ▴ 210

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Pathways graph PROcess SIM gage pathview Pathways graph PROcess SIM gage pathview

updated 11.4 years ago by Ed ▴ 230 • written 11.4 years ago by Luo Weijun ★ 1.6k

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SNP Annotation probe annotate SIM SNP Annotation probe annotate SIM

12.2 years ago Guest User ★ 13k

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Pathways Organism SIM KEGGgraph Pathways Organism SIM KEGGgraph

updated 15.1 years ago by Marc Carlson ★ 7.2k • written 15.1 years ago by Fraser Sim ▴ 270

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Rgraphviz SIM Rgraphviz SIM

updated 15.7 years ago by Patrick Aboyoun ★ 1.6k • written 15.7 years ago by ravi ▴ 130

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Rgraphviz SIM Rgraphviz SIM

updated 15.9 years ago by Martin Morgan 25k • written 15.9 years ago by Sim, Fraser ▴ 350

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genefilter affy limma GeneSpring affylmGUI GLAD SIM genefilter affy limma GeneSpring

16.5 years ago Mark Cowley ▴ 400

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Comment: EuroBioC2023 abstract submission closing soon! by Jeremy • 0

Thanks for the reminder! If you're a Bioconductor user or developer, make sure to [tabs][1] submit your abstract by the deadline, Monday, A…

Comment: Mean variance curve troubleshoot filtering by gingergeiger22 • 0

Gordon, thank for your response. 'filterByExpr()' was marginally better. I can see high variability in samples within the groups from the M…

Comment: What is the importance of `--countReadPairs` in featureCounts on paired end data by rohitsatyam102 ▴ 20

Since I don't know which organism you are working on, I would recommend using the following: `-s 0` if library is unstranded `-C` Discard…

Comment: What is the importance of `--countReadPairs` in featureCounts on paired end data by rohitsatyam102 ▴ 20

Yes use this option. It is recommended for PE and if you don't use it you will observe nearly twice the number of counts in your results. H…

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

I edited the previous post. I meant to remove the estimateGLMRobustDisp line in the second snipper : ```` DGE_list_object <- estimateGLMR…

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Comment: Comparing different method for DESEQ2

Answer: How do I fix an odd voom plot in a combined dataset?

Comment: How do I fix an odd voom plot in a combined dataset?

C: How does edgeR cpm function calculate log(CPM) values?

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