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PhenoGeneRanker BSgenome.Osativa.MSU.MSU7 mouse.db0 SIM
8 months ago Abu 0
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parsing discrete colors in pathview KEGG
SIM pathview SIM pathview
11.6 years ago Luo Weijun ★ 1.6k
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Farms/Call.INI using oligo package?
probe affy oligo SIM farms probe affy oligo SIM farms
11.9 years ago Djork Clevert ▴ 210
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Pathview for global and overview maps Re: using pathview about hsa01100
Pathways graph PROcess SIM gage pathview Pathways graph PROcess SIM gage pathview
updated 12.2 years ago by ▴ 230 • written 12.2 years ago by ★ 1.6k
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SNP6.0 annotation
SNP Annotation probe annotate SIM SNP Annotation probe annotate SIM
12.9 years ago Guest User ★ 13k
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KEGGgraph bug
Pathways Organism SIM KEGGgraph Pathways Organism SIM KEGGgraph
updated 15.9 years ago by ★ 7.2k • written 15.9 years ago by ▴ 270
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installation of Rgraphviz
Rgraphviz SIM Rgraphviz SIM
updated 16.5 years ago by ★ 1.6k • written 16.5 years ago by ▴ 130
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FW: Graphviz in Vista64
Rgraphviz SIM Rgraphviz SIM
updated 16.6 years ago by 25k • written 16.6 years ago by ▴ 350
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Cutoff to use for IQR filtering in genefilter
genefilter affy limma GeneSpring affylmGUI GLAD SIM genefilter affy limma GeneSpring
17.3 years ago Mark Cowley ▴ 400
9 results • Page 1 of 1
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
Was anyone else able to put the pieces together using the reply above? I read in one 10X sample using DropletUtils::read10xCounts() and thi…
Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0
Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…
Comment: Memory error while running alignments by Erik Wright ▴ 150
How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…
Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0
Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …
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Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
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