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PhenoGeneRanker BSgenome.Osativa.MSU.MSU7 mouse.db0 SIM
6 months ago Abu 0
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parsing discrete colors in pathview KEGG
SIM pathview SIM pathview
11.5 years ago Luo Weijun ★ 1.6k
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Farms/Call.INI using oligo package?
probe affy oligo SIM farms probe affy oligo SIM farms
11.8 years ago Djork Clevert ▴ 210
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Pathview for global and overview maps Re: using pathview about hsa01100
Pathways graph PROcess SIM gage pathview Pathways graph PROcess SIM gage pathview
updated 12.0 years ago by ▴ 230 • written 12.0 years ago by ★ 1.6k
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SNP6.0 annotation
SNP Annotation probe annotate SIM SNP Annotation probe annotate SIM
12.8 years ago Guest User ★ 13k
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KEGGgraph bug
Pathways Organism SIM KEGGgraph Pathways Organism SIM KEGGgraph
updated 15.7 years ago by ★ 7.2k • written 15.7 years ago by ▴ 270
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installation of Rgraphviz
Rgraphviz SIM Rgraphviz SIM
updated 16.3 years ago by ★ 1.6k • written 16.3 years ago by ▴ 130
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FW: Graphviz in Vista64
Rgraphviz SIM Rgraphviz SIM
updated 16.5 years ago by 25k • written 16.5 years ago by ▴ 350
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Cutoff to use for IQR filtering in genefilter
genefilter affy limma GeneSpring affylmGUI GLAD SIM genefilter affy limma GeneSpring
17.2 years ago Mark Cowley ▴ 400
9 results • Page 1 of 1
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Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ATpoint ★ 4.9k
No, cells from the same donor are correlated due to the donor effect. There is literature on this you should read to get started. https:/…
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by Raya • 0
Wouldn't each sample in the single cell rna seq act as a biological replicate? each condition (eg: mab3_20C) has ~70 single cell samples.
Comment: Getting way too many DEGs with LRT for time-series RNA-seq! by James W. MacDonald 68k
>Sequential post-exposure measurements of the same set of genes is not the same thing as having multiple treated groups! They are not the…
Comment: Getting way too many DEGs with LRT for time-series RNA-seq! by Denise • 0
Sequential post-exposure measurements of the same set of genes is not the same thing as having multiple treated groups! And I suppose ther…
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ATpoint ★ 4.9k
There is no biological replication here. This is not supported by DESeq2 (or mos credible statistical tools). You would need different dono…
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Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
Answer: Are voomByGroup and voomLmFit compatible?
Answer: p-adjusted values in multiple comparisons
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