Bioconductor SingleCellExperiment

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BatchEffect SingleCellExperiment

updated 3 months ago by James W. MacDonald 65k • written 3 months ago by NeuroDaniel • 0

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600

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SingleCellExperiment

4 months ago Dario Strbenac ★ 1.5k

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176

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SingleCellExperiment

4 months ago JalapenoCornbread • 0

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523

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tidyverse R SingleCellExperiment SingleCellData

updated 5 months ago by daenerystargaryen56 • 0 • written 5 months ago by Sitapriya • 0

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964

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SingleR SingleCellExperiment

5 months ago elgomez • 0

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523

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SingleCellExperiment

written 7 months ago by megan • 0

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1.8k

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SingleCellExperiment

written 5.1 years ago by Matthew Thornton ▴ 360

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887

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scRNAseq edgeR SingleCellExperiment

9 months ago duez.tolga • 0

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949

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singleR SingleCellExperiment SingleCellData

10 months ago Matvii Mykhailichenko • 0

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860

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scran SingleCellExperiment

11 months ago Lluís Revilla Sancho ▴ 730

10 results • Page 1 of 1

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Comment: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

We have some text about this particular question in the Frequently Asked Questions (FAQ) part of the software vignette.

Answer: How to run allelic imbalance in apeglm by Michael Love 42k

You can put 1 / 1 for the ratio when you are missing counts and then set the weight for that matrix cell to 1e-6. Let me know if that's …

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Got you. Thanks again for your comments.

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

Thanks so much for your comment. Yes, this makes sense to me, especially since the effect of the drug is subtle. But it raises a larger con…

Answer: ERROR; return code from pthread_create() is 22 by James W. MacDonald 65k

Seems OK to me. ``` > dat <- ReadAffy() > dat AffyBatch object size of arrays=744x744 features (20 kb) cdf=HG-U219 (49386 affyids) …

Votes

Comment: DESeq2- Mysterious interaction suppresses DEGs

Answer: DESeq2- Mysterious interaction suppresses DEGs

Answer: Subsetting RNAseq data | voomaByGroup()

biomaRt not working - lazy table error

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

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