Showing : singleR • reset
0
votes
3
replies
8.5k
views
SingleR Label.Ont
SingleR
updated 6 days ago by • 0 • written 8 months ago by • 0
0
votes
3
replies
542
views
dittobarplot Var error
RNASeq ditto dittoSeq SingleR
written 4 months ago by • 0
2
votes
4
replies
1.4k
views
SingleR annotation of several slots/patients
SingleR
written 5 months ago by ▴ 40
1
vote
4
replies
1.8k
views
JoinLayers function for Seurat Object for annotation with SingleR
SingleR SeuratscRNA
written 5 months ago by ▴ 40
1
vote
2
replies
956
views
Reduce single cell experiment size to use as reference for annotation with SingleR
SingleR SingleCellExperiment
5 months ago elgomez • 0
0
votes
1
reply
324
views
SingleR Book Not Found
SingleR
updated 5 months ago by ▴ 740 • written 5 months ago by • 0
1
vote
2
replies
837
views
trying to add SingleR label to Seurat Object fails
SingleR Seurat
updated 6 months ago by ★ 4.1k • written 6 months ago by ★ 1.5k
2
votes
2
replies
2.6k
views
After having the output from SingleR for cell type annotation, what's the next step to assign the cell type to each cluster
SingleCellSignalR SingleCellWorkflow SingleR
updated 6 months ago by ★ 1.5k • written 3.0 years ago by ▴ 10
0
votes
2
replies
939
views
Error in SingleR, no common genes between 'test' and 'ref'
singleR SingleCellExperiment SingleCellData
10 months ago Matvii Mykhailichenko • 0
0
votes
4
replies
3.7k
views
error in (function (classes, fdef, mtable) unable to find an inherited method for function logNormCounts for signature Seurat
seurat singleR
updated 10 months ago by • 0 • written 4.5 years ago by • 0
0
votes
0
replies
548
views
what should be the input for SingleR() automatic cell type annotation?
SingleR
11 months ago Yijing • 0
0
votes
1
reply
809
views
SingleR error with multiple references
SingleR
updated 11 months ago by • 0 • written 18 months ago by • 0
12 results • Page 1 of 1
Recent ...
Replies
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Comment: maSigPro genes from clusters by anne-laure • 0
Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards • All
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Koen Van den Berge ▴ 180
Popular Question to shepherl 3.9k
Popular Question to Ken C • 0
Popular Question to Johannes Rainer ★ 2.0k
Locations • All
United States, just now
San Diego, 6 minutes ago
Sweden, 20 minutes ago
Ireland, 29 minutes ago
United States, 35 minutes ago
Traffic: 783 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6