Showing : sleuth • reset
2
votes
2
replies
2.5k
views
RUVg with differential transcript expression?
ruvseq sleuth
updated 7.8 years ago by ▴ 980 • written 7.8 years ago by • 0
3
votes
3
replies
3.1k
views
Using sluth with Salmon data, error while sleuth_prep
sleuth R salmon rna seq salmon
8.0 years ago Walter F. Baumann ▴ 10
1
vote
1
reply
6.6k
views
DESeq2 with continuous variables - predictors and/or outcomes
deseq2 negative binomial model robust regression sleuth
updated 8.4 years ago by 43k • written 8.4 years ago by • 0
0
votes
4
replies
2.6k
views
Error: Pathway analysis using Sleuth results
pathview gage rna-seq R sleuth
8.9 years ago • updated 8.8 years ago bioinf ▴ 10
4 results • Page 1 of 1
Recent ...
Replies
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction by Kevin Blighe ★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Answer: Streamlining the computing time for MiloDE p-value correction in large dataset? by Kevin Blighe ★ 4.0k
Hi Joseph, I agree with ATpoint's suggestion that pseudobulk aggregation (e.g., via aggregateData in scran or similar) would likely be far…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
Awards • All
Scholar to shepherl 4.2k
Scholar to James W. MacDonald 68k
Popular Question to Daniel Cameron ▴ 40
Popular Question to Peter Hickey ▴ 760
Popular Question to edward.esiribloom • 0
Locations • All
Pittsburgh, United States, 1 hour ago
Barcelona, Spain, 2 hours ago
Chile, 2 hours ago
United Kingdom, 3 hours ago
The Cave, 181 Longwood Avenue, Boston, USA, 5 hours ago
Traffic: 565 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6