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Showing :
snpmatrix
•
reset
0
votes
0
replies
525
views
Parsing through snp matrix
snpmatrix
GGI
5.1 years ago
GENOMIC_region
• 0
0
votes
0
replies
509
views
Error in snpStats::read.pedfile: GeneGeneInter
snpmatrix
ped
6.3 years ago
GENOMIC_region
• 0
0
votes
0
replies
1.8k
views
snpStats/GWASTools conversion
cdf
convert
snpMatrix
snpStats
GWASTools
cdf
convert
snpMatrix
snpStats
GWASTools
10.6 years ago
Stephanie M. Gogarten
▴ 870
0
votes
5
replies
3.7k
views
how to convert genotype snp matrix to nucleotide genotypes?
SNP
convert
snpMatrix
SNP
convert
snpMatrix
updated 11.0 years ago by
Vincent J. Carey, Jr.
6.7k • written 11.0 years ago by
Tereza Jezkova UNLV
▴ 20
0
votes
1
reply
1.4k
views
col.summary error in snpStats
SNP
Sequencing
Annotation
snpMatrix
snpStats
SNP
Sequencing
Annotation
snpMatrix
snpStats
updated 11.1 years ago by
Vincent J. Carey, Jr.
6.7k • written 11.1 years ago by
Tereza Jezkova - personal
▴ 10
0
votes
6
replies
5.6k
views
Calculate heterozygosity % using SNP genotype data
SNP
snpMatrix
SNP
snpMatrix
updated 11.8 years ago by
Vincent J. Carey, Jr.
6.7k • written 11.8 years ago by
gowtham
▴ 210
0
votes
3
replies
2.8k
views
GWAS with Affymetrix SNP 6.0
SNP
oligo
snpMatrix
snpStats
SNP
oligo
snpMatrix
snpStats
updated 11.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 11.9 years ago by
David Hervás
▴ 20
0
votes
1
reply
1.5k
views
convert GGtools object (generated by vcf2sm) to snpMatrix class or other class
SNP
convert
GGtools
snpMatrix
SNP
convert
GGtools
snpMatrix
updated 12.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.9 years ago by
Mao Jianfeng
▴ 290
0
votes
1
reply
1.1k
views
Problems Reading SNPs into snpMatrix
SNP
snpMatrix
SNP
snpMatrix
updated 13.0 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.0 years ago by
Chris K. Fuller
▴ 10
0
votes
1
reply
908
views
crlmm and snpMatrix
snpMatrix
crlmm
snpMatrix
crlmm
updated 13.9 years ago by
Benilton Carvalho
★ 4.3k • written 13.9 years ago by
Tim Rayner
▴ 270
0
votes
0
replies
883
views
major alterations to GGdata/GGtools planned
SNP
snpMatrix
cycle
SNP
snpMatrix
cycle
16.1 years ago
Vincent J. Carey, Jr.
6.7k
11 results • Page
1 of 1
Recent ...
Replies
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I have tried what you suggested. I started with methylation loci. I created segment1 and segment2 but how to combine them bec…
Comment: EGSEA usage with microarray data (with vooma)?
by
Chris
• 0
Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results
by
swbarnes2
★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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Michael Love
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Haibo Liu
• 0
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▴ 10
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DevelopingHippo
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Robert Castelo
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