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Pankaj Agarwal
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Answer: object 'hdac_targets' not found
by
James W. MacDonald
67k
I believe you missed some steps:
```
## ----trTargets-------------------------------------------------------------
tr_targets <- subse…
Answer: KEGGgraph result difference
by
alex.pico
▴
20
I'm not surprised that this fails. Not all GraphNELs nor igraphs are the same, so these chains of conversions are fraught with peril. Assu…
Answer: In the sesame package, what does the estimate output mean from testEnrichment()
by
James W. MacDonald
67k
It's right there in the output (`Log2(OR)`). It's doing a Fisher's exact test, which returns an odds ratio, and the output is the log odds …
Comment: WGCNA Choosing soft threshold power below R^2 0.8
by
Lluís Revilla Sancho
▴
730
This is not a bioconductor pacakge, but have you considered that something might be off with your data? Do you have enough samples of each …
Comment: WARNING: No Bioconductor dependencies detected.
by
katja.danielzik
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0
Hi Laurent,
thank you for your answer! Yes, I will use the Summarized Experiment class in package.
Best,
Katja
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