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spade
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Issues connecting with R 3.2.2 to source("http://bioconductor.org/biocLite.R")
spade
8.5 years ago
frostbite907
• 0
0
votes
1
reply
1.0k
views
Version 1.10 of spade appears to be non-compatible with Cytoscape 2.8.x
spade
spade
updated 10.1 years ago by
Michael Linderman
▴ 10 • written 10.1 years ago by
Guest User
★ 13k
0
votes
0
replies
831
views
How to find frequent sequences.
spade
spade
11.8 years ago
Guest User
★ 13k
0
votes
1
reply
1.1k
views
Algorithm fail to generate CSV file
R
flowjo
spade
updated 7.5 years ago by
James W. MacDonald
65k • written 7.5 years ago by
maria_him4ever
• 0
0
votes
0
replies
776
views
Interpreting Spade analysis results
spade
7.0 years ago
Pankaj Agarwal
▴ 100
0
votes
4
replies
1.6k
views
Why SPADE package has been removed from bioconductor?
spade
release
remove
clustering
updated 6.0 years ago by
James W. MacDonald
65k • written 6.0 years ago by
a.n.horvath
• 0
0
votes
2
replies
2.0k
views
Unable to follow example SPADE usage - Cannot create iterator, invalid vertex id
igraph
spade
updated 6.9 years ago by
johnheath346
• 0 • written 8.4 years ago by
duncanjamesmurray01
• 0
7 results • Page
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I am working with mouse data. I don't know how to do this, but I will go through it. Can you help me with the second question? how do we …
Comment: [Mfuzz] Error in cmeans(exprs(eset)
by
Caio
• 0
You can have this problem (lines with variance equal to zero) when you run experiments and obtain the data with more samples and use fewer …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The left plot indicates you should use genome segmentation. It is what is called "nonstationary" meaning it looks like there are distinct r…
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
gene_bioconductor
▴ 10
Thanks for your thoughtful and detailed comment, Gordon
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I looked into the genomic distributions. Please see the screenshot attatched ![ distrubution for female loci, boot1 and boot2][1] how do …
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Answer: Method to find pathways different between 2 groups
Answer: Method to find pathways different between 2 groups
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Method to find pathways different between 2 groups
Comment: Trying to use enrichGO
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