Bioconductor Statistical test

Showing : statistical test • reset

2

votes

2

replies

1.3k

views

posterior pobability statistical test theory

updated 4.9 years ago by James W. MacDonald 68k • written 4.9 years ago by stephanie.rialle • 0

0

votes

8

replies

6.0k

views

Deseq deseq2 differential gene expression rnaseq statistical test

7.1 years ago Marina ▴ 40

0

votes

6

replies

1.9k

views

biologicalreplicates statistical test

updated 8.6 years ago by Gordon Smyth 52k • written 17.5 years ago by Yogi Sundaravadanam ▴ 320

0

votes

1

reply

1.1k

views

diffHiC statistical test

updated 8.7 years ago by Aaron Lun ★ 28k • written 8.7 years ago by lazaris • 0

4 results • Page 1 of 1

Recent ...

Replies

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Benjamin ▴ 20

I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…

Answer: Error in cnetplot by Guido Hooiveld ★ 4.1k

Unfortunately you did not show how you generated your input data (the object `enrichment`), nor did you show the output from `sessionInfo()…

Answer: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

I think this is because Ensembl can assign different Gene IDs to "the same gene" if it is found both on a standard chromosome and a scaffol…

Votes

Answer: Merging annotation with differential expression output

Answer: Explannation for ROAST results

Comment: Limma comparing gene expression between base line and one treatment

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

clusterProfiler-GO enrichment Error

Awards • All