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Comment: Biomart and ensembl not working?
by
Irene
•
0
It seems to be working for mouse but not for human
ensembl <- biomaRt::useEnsembl(biomart = "ensembl", dataset = "hsapiens_gene_ensemb…
Answer: Biomart and ensembl not working?
by
James W. MacDonald
67k
Unfortunately the Ensembl websites can be a bit unstable. The only recourse that I know of is patience and trying later. It appears to be c…
Answer: Unknown gene transcripts after annotatr
by
James W. MacDonald
67k
Both NCBI and Ensembl are constantly pruning IDs. I would assume those have all been removed. [For example][1].
[1]: https://useast.…
Comment: Biomart and ensembl not working?
by
Irene
•
0
I have the same problem for the last ~30h
ensembl <- biomaRt::useEnsembl(biomart = "ensembl", dataset = "mmusculus_gene_ensembl", mir…
Answer: DESeq2 Heatmap
by
James W. MacDonald
67k
Two things. First, `scale` is already vectorized, so you don't have to use `apply`. You can instead just do `t(scale(t(mat)))` . Second, th…
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