Bioconductor Syntenet

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syntenet synteny Network

written 2.2 years ago by Alexandros • 0

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845

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syntenet microsynteny blocks synteny

written 18 months ago by Alexandros • 0

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494

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syntenet

updated 10 months ago by Fabricio Almeida-Silva ▴ 40 • written 12 months ago by Sujeevan • 0

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1.8k

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syntenet

updated 12 months ago by Sujeevan • 0 • written 2.1 years ago by lwanderson8c • 0

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455

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syntenet

updated 10 months ago by Fabricio Almeida-Silva ▴ 40 • written 12 months ago by Sujeevan • 0

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519

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syntenet doubletrouble

10 months ago hfyuan2016 • 0

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837

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syntenet Bacteria synteny

updated 13 months ago by Fabricio Almeida-Silva ▴ 40 • written 15 months ago by kluongni • 0

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880

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Network syntenet Clustering coefficient

18 months ago Alexandros • 0

8 results • Page 1 of 1

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Comment: How to generate circular cnetplot and color nodes and edges in the same plot ? by Blandine • 0

Thank you so much ! It's working !

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by James W. MacDonald 67k

Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…

Comment: Recount3 data correspond to TCGA data by Leonardo Collado Torres ★ 1.1k

Thanks @fep29! ^^

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

I am in a similar situation. So, I have a matrix of beta values with row names as probe ids (which are annotated to hg38 as it is from harm…

Comment: WGCNA: Can we use high power (26) for signed network? by Vinesh • 0

Hello, Thank you for the response. I have already raised the same question on biostars.

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Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

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Popular Question to Robert Ivanek ▴ 750