Bioconductor Tpp

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484

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TPP

updated 9 months ago by James W. MacDonald 68k • written 9 months ago by flowreen.shikwana • 0

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594

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TPP

updated 15 months ago by James W. MacDonald 68k • written 15 months ago by Alexandre Mahé • 0

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1.1k

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TPP NPARC

updated 5.1 years ago by nils.kurzawa ▴ 20 • written 5.1 years ago by yangwanqi • 0

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752

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TPP

updated 5.8 years ago by Gordon Smyth 53k • written 5.8 years ago by esmaeil.dehghan • 0

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962

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software error TPP

updated 6.9 years ago by shepherl 4.2k • written 6.9 years ago by kkim369 • 0

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3.4k

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TPP

8.3 years ago Bioinformatics ▴ 30

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1.7k

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TPP

updated 8.3 years ago by Pariksheet Nanda ▴ 120 • written 8.3 years ago by Nemo ▴ 80

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1.5k

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TPP

updated 9.2 years ago by dchilds ▴ 40 • written 9.2 years ago by Bioinformatics ▴ 30

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1.6k

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tpp

updated 9.2 years ago by dchilds ▴ 40 • written 9.2 years ago by Bioinformatics ▴ 30

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1.4k

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TPP

updated 9.5 years ago by Martin Morgan 25k • written 9.5 years ago by Bioinformatics ▴ 30

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Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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