Bioconductor Tpp

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TPP

updated 18 days ago by James W. MacDonald 68k • written 19 days ago by flowreen.shikwana • 0

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426

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TPP

updated 6 months ago by James W. MacDonald 68k • written 6 months ago by Alexandre Mahé • 0

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945

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TPP NPARC

updated 4.4 years ago by nils.kurzawa ▴ 20 • written 4.4 years ago by yangwanqi • 0

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593

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TPP

updated 5.1 years ago by Gordon Smyth 52k • written 5.1 years ago by esmaeil.dehghan • 0

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802

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software error TPP

updated 6.2 years ago by shepherl 4.1k • written 6.2 years ago by kkim369 • 0

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3.0k

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TPP

7.6 years ago Bioinformatics ▴ 30

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TPP

updated 7.6 years ago by Pariksheet Nanda ▴ 120 • written 7.6 years ago by Nemo ▴ 80

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TPP

updated 8.5 years ago by dchilds ▴ 40 • written 8.5 years ago by Bioinformatics ▴ 30

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1.3k

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tpp

updated 8.5 years ago by dchilds ▴ 40 • written 8.5 years ago by Bioinformatics ▴ 30

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1.3k

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TPP

updated 8.8 years ago by Martin Morgan 25k • written 8.8 years ago by Bioinformatics ▴ 30

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Comment: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Arctic • 0

Many thanks for the link to the C++ code. I will see if I can find someone with C++ experience to help me with the code breakdown from her…

Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran by Aaron Lun ★ 28k

It's calling C++ code, see the relevant function definitions on [GitHub](https://github.com/knncolle/BiocNeighbors/blob/master/src/generics…

Answer: DESeq2 by ATpoint ★ 4.8k

Time courses are often inevitable batches but you should have done the library prep at the same day, just extract RNA per day. If not then …

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer, very useful!

Votes

Comment: plyranges: find exact GRanges match keeping metadata columns

Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran

Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?

Answer: Is it possible to speed up VariantAnnotation's rowRanges function when convertin

Comment: ComBat with repeated measures

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