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tracks
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reset
2
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3
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1.7k
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ggbio tracks() function handling x axis in the wrong way
ggbio
ggplot2
tracks
genomics
plot
7.6 years ago
oswaldo.lorenzo
▴ 10
1
vote
3
replies
2.8k
views
Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() function
ggplot2
ggbio
plot
tracks
bioconductor
updated 7.3 years ago by
Michael Lawrence
★ 11k • written 7.3 years ago by
oswaldo.lorenzo
▴ 10
0
votes
2
replies
1.6k
views
x-axis ticks are misaligned in ggbio tracks
ggbio
bugs
tracks
autoplot
9.3 years ago • updated 9.2 years ago
cooketho
• 0
0
votes
2
replies
1.1k
views
ggbio: untransformed coordinate when using `tracks` function with IRanges or numeric value as `xlim`
ggbio
tracks
updated 7.6 years ago by
oswaldo.lorenzo
▴ 10 • written 7.7 years ago by
Marlin
▴ 20
0
votes
1
reply
1.3k
views
ggbio tracks issue
ggbio
tracks
7.4 years ago
longoka
• 0
5 results • Page
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Comment: Store output of matchPWM()
by
James W. MacDonald
65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
Comment: DEseq2 coefficient
by
JKim
• 0
Hi Dr. Love, I'm sorry to ask another question to my old post. If the design isn't balanced, the interpretation of coefficients will be…
Comment: Store output of matchPWM()
by
mat149
▴ 70
out <- do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) Error in do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) : '…
Answer: Store output of matchPWM()
by
James W. MacDonald
65k
Something like this? ``` ind <- as.logical(sapply(hitlist, length)) out <- do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) …
Answer: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
This has been asked before, but with a multi factor design, the LFC for coefficient X adjust for the others, in a way that is often hard to…
Votes
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
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