Biostar Bugs

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924

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arrayexpress affy bugs

updated 4.2 years ago by James W. MacDonald 59k • written 4.2 years ago by Ed Siefker ▴ 230

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1.1k

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GSVA bug gsva bugs

updated 4.6 years ago by Robert Castelo ★ 2.8k • written 4.6 years ago by JasonL_Weirather ▴ 10

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761

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DiffBind bugs

updated 5.0 years ago by Rory Stark ★ 4.4k • written 5.0 years ago by jeremydt • 0

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898

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txdb.hsapiens.ucsc.hg19.knowngene seqlevels bugs

updated 5.4 years ago by Hervé Pagès 15k • written 5.4 years ago by wcstcyx ▴ 30

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726

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annotationhub bugs encode bed

5.4 years ago wcstcyx ▴ 30

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650

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bugs impute

5.7 years ago Shicheng Guo • 0

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1.2k

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software error bugs deseq2

updated 6.3 years ago by Michael Love 36k • written 6.3 years ago by john.hu • 0

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999

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monocle bugs

6.5 years ago wanghao1993333 • 0

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1.1k

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ggbio bugs tracks autoplot

7.3 years ago cooketho • 0

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1.1k

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arrayqualitymetrics bugs error

updated 7.5 years ago by James W. MacDonald 59k • written 7.5 years ago by daugherty_a • 0

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1.6k

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Bugs deseq2

updated 7.7 years ago by Michael Love 36k • written 7.7 years ago by lmf.bill@gmail.com ▴ 10

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1.2k

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Bugs ggbio

7.7 years ago Anne Deslattes Mays ▴ 30

12 results • Page 1 of 1

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Comment: TPM data Differential expression analysis by hnthirim ▴ 10

Hi @gordonsmyth, Question on your above answer: I have logTPM normalized data. Can I perform DE analysis using it on EdgeR, instead of in…

Comment: rtracklayer S.h by gibran • 0

Thanks, much appreciated. So I think this approach actually gets binaries and I'm not sure how to isolate the problem I was experiencing as…

Comment: DESeq2, Calculate the size factor by using median-of-ratio by KEREN • 0

Hi Michael, thank you for you reply. My concern here mainly focus on the high variances in samples of condition "mESC_mRNA_WT". I observed…

Comment: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro by Rory Stark ★ 4.4k

I agree the documentation could be clearer -- it took me a while to understand what it said so I could address your issue!

Answer: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro by chrarnold • 0

Thanks a lot for your quick reply, it is very appreciated! Indeed, with your 2 suggested modifications, I can again reproduce the results f…

Votes

Answer: rtracklayer S.h

Answer: DESeq2: Extracting Averaged Counts Information from dds and rld

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Scholar to jared.andrews07 ▴ 30

Scholar to vanbelj ▴ 10

Scholar to James W. MacDonald 59k

Popular Question to Johannes Rainer ★ 1.9k