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11
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limma::contrast.fit() potential bugs when weights from voom() included
bugs
limma
2.6 years ago
Zhenyu
• 0
0
votes
2
replies
2.0k
views
AffyBatch and ArrayExpress
arrayexpress
affy
bugs
updated 7.1 years ago by
James W. MacDonald
68k • written 7.1 years ago by
Ed Siefker
▴ 230
5
votes
16
replies
3.1k
views
GSVA package scores are opposite on mac and windows
GSVA
bug
gsva
bugs
updated 7.5 years ago by
Robert Castelo
★ 3.4k • written 7.5 years ago by
JasonL_Weirather
▴ 10
0
votes
1
reply
1.3k
views
bug in dba.overlap (dba.plotVenn)
DiffBind
bugs
updated 7.9 years ago by
Rory Stark
★ 5.2k • written 7.9 years ago by
jeremydt
• 0
2
votes
3
replies
1.8k
views
A bug of "seqlevels<-" on TxDb
txdb.hsapiens.ucsc.hg19.knowngene
seqlevels
bugs
updated 8.3 years ago by
Hervé Pagès
16k • written 8.4 years ago by
wcstcyx
▴ 30
5
votes
2
replies
1.6k
views
AnnotationHub: two broad peaks from same url are not the same
annotationhub
bugs
encode
bed
8.4 years ago
wcstcyx
▴ 30
0
votes
0
replies
1.2k
views
Bugs for impute package
bugs
impute
8.6 years ago
Shicheng Guo
• 0
0
votes
4
replies
1.9k
views
DESeq2 contrast cleaning problem
software error
bugs
deseq2
updated 9.2 years ago by
Michael Love
43k • written 9.2 years ago by
john.hu
• 0
0
votes
0
replies
1.7k
views
error: no slot of name "expressionFamily" for this object of class "CellDataSet"
monocle
bugs
9.4 years ago
wanghao1993333
• 0
0
votes
2
replies
1.9k
views
x-axis ticks are misaligned in ggbio tracks
ggbio
bugs
tracks
autoplot
10.2 years ago
cooketho
• 0
4
votes
3
replies
1.7k
views
arrayQualityMetrics error with one color array and log transform
arrayqualitymetrics
bugs
error
updated 10.4 years ago by
James W. MacDonald
68k • written 10.4 years ago by
daugherty_a
• 0
0
votes
4
replies
2.3k
views
DESeq2 more differentially expressed genes
Bugs
deseq2
updated 10.6 years ago by
Michael Love
43k • written 10.6 years ago by
lmf.bill@gmail.com
▴ 10
0
votes
0
replies
1.6k
views
ggbio() + geom_alignment has stopped working
Bugs
ggbio
10.6 years ago
Anne Deslattes Mays
▴ 30
13 results • Page
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Comment: European Bioconductor Conference 2023 planning
by
ht
• 0
Great news about the European Bioconductor Conference 2023 planning! As someone who enjoys statistical computing and bioinformatics, I'm ex…
Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label
by
njmcdirectportal.com
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This is a great post. I like this topic. I found many interesting things from this site. Thanks for posting this again https://www.njmcdire…
Answer: Version conflict when pushing to scQTLtools devel branch
by
shepherl
4.1k
There is a Bioconductor release today. There were notifications on the bioc-devel mailing list https://stat.ethz.ch/pipermail/bioc-devel…
Comment: DiffBind can't find a DAR
by
Mengjun
• 0
The details about this question: I have 4 samples with 2 conditions( ctrl_1, ctrl_2, ko_1, ko_2), i use these 4 samples as input. Here is …
Comment: DiffBind can't find a DAR
by
Mengjun
• 0
Thank you very much for pointing out this shortcoming. I will improve it.
Votes
Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA
Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA
Answer: GSVA ssGSEA vs. Broad implementation of ssGSEA
GSVA ssGSEA vs. Broad implementation of ssGSEA
Comment: biomaRt server error, and mirrors do not help
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