Showing : bugs • reset
0
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2
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AffyBatch and ArrayExpress
arrayexpress affy bugs
updated 3.5 years ago by 58k • written 3.5 years ago by ▴ 230
5
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16
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1.0k
views
GSVA package scores are opposite on mac and windows
GSVA bug gsva bugs
updated 4.0 years ago by ★ 2.7k • written 4.0 years ago by ▴ 10
0
votes
1
reply
665
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bug in dba.overlap (dba.plotVenn)
DiffBind bugs
updated 4.3 years ago by ★ 4.1k • written 4.3 years ago by • 0
2
votes
3
replies
794
views
A bug of "seqlevels<-" on TxDb
txdb.hsapiens.ucsc.hg19.knowngene seqlevels bugs
updated 4.8 years ago by 15k • written 4.8 years ago by ▴ 30
5
votes
2
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625
views
AnnotationHub: two broad peaks from same url are not the same
annotationhub bugs encode bed
4.8 years ago wcstcyx ▴ 30
0
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0
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567
views
Bugs for impute package
bugs impute
5.0 years ago Shicheng Guo • 0
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4
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1.2k
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DESeq2 contrast cleaning problem
software error bugs deseq2
updated 5.6 years ago by 34k • written 5.6 years ago by • 0
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0
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928
views
error: no slot of name "expressionFamily" for this object of class "CellDataSet"
monocle bugs
5.8 years ago wanghao1993333 • 0
0
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2
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1.0k
views
x-axis ticks are misaligned in ggbio tracks
ggbio bugs tracks autoplot
6.6 years ago cooketho • 0
4
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3
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988
views
arrayQualityMetrics error with one color array and log transform
arrayqualitymetrics bugs error
updated 6.9 years ago by 58k • written 6.9 years ago by • 0
0
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4
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1.5k
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DESeq2 more differentially expressed genes
Bugs deseq2
updated 7.0 years ago by 34k • written 7.0 years ago by ▴ 10
0
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0
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1.1k
views
ggbio() + geom_alignment has stopped working
Bugs ggbio
7.0 years ago Anne Deslattes Mays ▴ 30
12 results • Page 1 of 1
Recent ...
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Comment: Diffbind dba.plotProfile attempt to select less than one element in OneIndex by bhanratt • 0
``` > DBA 10 Samples, 31953 sites in matrix: ID Tissue Factor Condition Replicate Reads FRiP 1 58 1 H3K4me3 AD …
Answer: Warning messages on Apple M1 BigSur by Vincent J. Carey, Jr. 6.5k
We are not producing M1 binaries at this time. If you use the intel version of R under Rosetta 2 you can use the intel mac binaries.
Comment: Issue::DesignPrimers DECIPHER by slwmartin • 0
Hey, I'm having this issue too. I've tried reinstalling using Conda a few times without luck. Did you reinstall with Conda or from the tar …
Comment: Log fold change interpretation of time series with Wald test by jd348 • 0
So would you recommend still using Log2fold change as a measurement for effect size?
Answer: Error in `*tmp*`$samples : $ operator is invalid for atomic vectors by James W. MacDonald 58k
I believe you want ``` > x <- as.matrix(read.delim("E:/bioinformatic/RNAseq/GSE168008_raw_count.txt", sep ="" ,row.names = 1)) > sampl…
Votes
Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
A: gviz: name of tracks disappeas
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
Awards • All
Teacher to Vincent J. Carey, Jr. 6.5k
Scholar to Rory Stark ★ 4.1k
Scholar to jbnrodriguez • 0
Scholar to Yang Liao ▴ 260
Scholar to James W. MacDonald 58k
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