Biostar Treeio

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treeio EPA jplace RAxML ggtree

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ggtree treeio phyloseq annotation tip_glom

updated 4.5 years ago by Guangchuang Yu ★ 1.2k • written 4.5 years ago by werdnus • 0

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Comment: An ESR essay about software design, and how it applies to Bioconductor by Gary • 0

It's relevant for me, thank you for the information!

Comment: An ESR essay about software design, and how it applies to Bioconductor by Gary • 0

Thank you for sharing!

Comment: conditional command within GRanges by Basti ▴ 390

I can't reproduce your issue because you did not provided an example of your dataset (example with `dput(head(data1))`, but in the first ca…

Comment: Error in Create switchAnalyzeRlist by k.vitting.seerup ▴ 120

That sounds like you have the wrong version of the annotation compared to which version you used for the quantification?

Comment: Error in Create switchAnalyzeRlist by bpshtiwan ▴ 10

Great... now it is same. but still I have problem with four possibilities during using IsoformSwitchAnalyzeR. Knidly, any idea where is the…

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Answer: WHat is the difference between DEG and TopVarGenes in DESEq2?

A: EGSEA error during report generation: "only 0's may be mixed with negative subsc

Answer: mapToAlignments_issue

Analysis of peaks generated from Homer using Diffbind

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