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treeio
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How to place jplace Querries from EPA RAxML on the tree as branches in Teeio/ggtree?
treeio
EPA
jplace
RAxML
ggtree
22 months ago
Vincent
• 0
0
votes
3
replies
1.5k
views
How can I read in BEAST nexus tree with treeio and get all node values
treeio
beast
nexus
ips
OutbreakTools
4.2 years ago
sknu003
• 0
0
votes
1
reply
1.3k
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How to save changes on a phylogeneitc tree using ggtree and treeio?
ggtree
treeio
4.6 years ago
jdimopoulos21
• 0
0
votes
1
reply
975
views
tip_glom and annotations?
ggtree
treeio
phyloseq
annotation
tip_glom
updated 5.0 years ago by
Guangchuang Yu
★ 1.2k • written 5.0 years ago by
werdnus
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Comment: How to load fasta file with openPrimeR?
by
mdoering
▴ 10
A FASTA file is a raw text file (not MS Word or the likes), with a specific structure, along the likes of: > \>seq_id_1 \ > ACAGCACA \ > \…
Comment: How to load fasta file with openPrimeR?
by
Santiago Edilberto
• 0
How do I know if my file is properly formatted FASTA file?
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
by
Hervé Pagès
16k
Got it. Yeah I guess having a `strandMode` parameter for `readGAlignmentsList()` would help handle this. @Robert: Do you want to open an i…
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
by
James W. MacDonald
62k
One reason to use a GAlignmentsList object is if you have 'too many' unpaired reads for some reason and you want to recover them. And it's …
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
by
Hervé Pagès
16k
Hi Robert, Just to clarify, a GAlignmentsList object represents a list of GAlignments objects, in the same way that a GRangesList object r…
Votes
Answer: Is this DESeq2 interactions design correct?
Comment: STRINGdb string_db$map error
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R
C: Can't install TopmedPipeline Package
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