Biostar Volcano-plot

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volcano-plot EnhancedVolcano

updated 10 weeks ago by Kevin Blighe 3.2k • written 3 months ago by Assa Yeroslaviz ★ 1.5k

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Comment: DESeq2 question: why I got discrepancy results for DEGs when using different way by Michael Love 33k

What is the correlation of the LFC for your two contrasts of mut vs wt in auto ganglia? Does the scatterplot of log2 fold changes look like…

Comment: DESeq2 question: why I got discrepancy results for DEGs when using different way by Ming ▴ 350

Thx for the advice about the reference levels, in which I did do as you suggested! In fact, I even tried more options just want to see why…

Answer: Time series DE gene analysis with edgeR where specific timepoints have NA levels by Gordon Smyth 43k

> is there a way to incorporate also the information of the additional samples that lack any of the aforementioned levels? NA values are n…

Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels by James W. MacDonald 57k

The `voomLmFit` function will automatically fit a linear mixed model accounting for within-subject correlations if you block on patient, so…

Comment: error in getBM (biomaRt): "error: no such table: metadata" by Mike Smith ★ 5.0k

Thanks for providing this solution. Anyone else encountering the issue can test if the cache is a problem by running `getBM()` with the ar…

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tximeta error in fetching genome info

Answer: cannot install edgeR on M1 Mac

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Scholar to James W. MacDonald 57k

Teacher to Guido Hooiveld ★ 3.0k

Scholar to Michael Love 33k