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Showing :
EnhancedVolcano
•
reset
0
votes
2
replies
336
views
EnhancedVolcano with labels based on log2 Fold Change
EnhancedVolcano
written 3 months ago by
sara.jacobson
• 0
0
votes
4
replies
957
views
enhanced volcano , different -log10pvalue of the same gene
EnhancedVolcano
RNASeqData
DifferentialExpression
10 months ago
ruba-mahmoud
• 0
4
votes
5
replies
1.5k
views
EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
Transcriptomics
EnhancedVolcano
updated 11 months ago by
Kevin Blighe
★ 3.9k • written 11 months ago by
Peter
▴ 20
0
votes
1
reply
435
views
Error in names(label_color[label_color == "organe"]) <- "lysosome" : 'names' attribute [1] must be the same length as the vector [0]
EnhancedVolcano
updated 11 months ago by
elefth.pavlos
▴ 40 • written 11 months ago by
Phương Thùy
• 0
2
votes
2
replies
871
views
Overlay points with EnhancedVolcano R
EnhancedVolcano
updated 12 months ago by
Kevin Blighe
★ 3.9k • written 12 months ago by
redafazazi
• 0
0
votes
2
replies
511
views
Only display positive FC on volcano plot
EnhancedVolcano
updated 12 months ago by
Kevin Blighe
★ 3.9k • written 12 months ago by
Tanner
• 0
2
votes
4
replies
1.9k
views
EnhancedVolcano legendPosition error
EnhancedVolcano
updated 16 months ago by
elefth.pavlos
▴ 40 • written 16 months ago by
Allison
• 0
0
votes
2
replies
805
views
Is it possible for the legend labels to be different from the Colcustom names?
EnhancedVolcano
enha
16 months ago
elefth.pavlos
▴ 40
0
votes
2
replies
873
views
Unable to over/ride colour scheme with custom key-value pairs
EnhancedVolcano
updated 17 months ago by
Kevin Blighe
★ 3.9k • written 17 months ago by
patrirodry85
• 0
0
votes
1
reply
1.5k
views
Enhanced Volcano Error when drawing connectors
EnhancedVolcano
updated 17 months ago by
Kevin Blighe
★ 3.9k • written 17 months ago by
deena.maurer
• 0
0
votes
0
replies
441
views
MetaVolcanoR usage
limma
MetaVolcanoR
EnhancedVolcano
20 months ago
JAcky
• 0
0
votes
6
replies
2.1k
views
How to change all text, including point labels to Arial?
EnhancedVolcano
updated 21 months ago by
James W. MacDonald
65k • written 21 months ago by
junli1988
• 0
0
votes
3
replies
814
views
change a column within a DESeq results object
EnhancedVolcano
updated 21 months ago by
Guido Hooiveld
★ 3.9k • written 21 months ago by
Matt
• 0
0
votes
5
replies
1.2k
views
Italicise
EnhancedVolcano
updated 21 months ago by
Kevin Blighe
★ 3.9k • written 22 months ago by
Pau
• 0
3
votes
5
replies
2.3k
views
Print EnhancedVolcano Plot as jpeg or similar in R Notebook
EnhancedVolcano
updated 22 months ago by
Kevin Blighe
★ 3.9k • written 22 months ago by
Bine
▴ 40
0
votes
0
replies
796
views
Plotting Upregulated and down regulated genes in different colour
EnhancedVolcano
2.1 years ago
Somenath
• 0
1
vote
4
replies
1.5k
views
Issue with selectively labelling genes in the Enhanced Volcano package
EnhancedVolcano
updated 2.2 years ago by
Kevin Blighe
★ 3.9k • written 2.2 years ago by
Jonathan
▴ 10
1
vote
1
reply
1.0k
views
Issue with lengthConnectors in EnhancedVolcano
EnhancedVolcano
updated 11 weeks ago by
mohamad.hajo89
• 0 • written 2.2 years ago by
ikotlar
▴ 10
1
vote
3
replies
1.4k
views
Enhancedvolcano labels superimposed on points
EnhancedVolcano
updated 2.2 years ago by
Kevin Blighe
★ 3.9k • written 2.2 years ago by
acharest
• 0
0
votes
0
replies
666
views
EnhancedVolcano, coloring of a subset of labels
EnhancedVolcano
2.3 years ago
bradyb
• 0
0
votes
2
replies
1.5k
views
ERROR installing EnhancedVolcano in R4.1
EnhancedVolcano
updated 2.4 years ago by
Kevin Blighe
★ 3.9k • written 2.4 years ago by
Raj
• 0
0
votes
5
replies
1.7k
views
EnhancedVolcano plot - labels
EnhancedVolcano
updated 2.5 years ago by
Kevin Blighe
★ 3.9k • written 2.5 years ago by
Johannes
• 0
5
votes
4
replies
4.4k
views
ylim and xlim in Enhanced Volcano
DESeq2
EnhancedVolcano
Bioconductor
updated 2.6 years ago by
Kevin Blighe
★ 3.9k • written 2.6 years ago by
Rachel
• 0
2
votes
6
replies
3.7k
views
How can I use geom_label_repel with EnhancedVolcano?
ggrepel
RNASeq
R
EnhancedVolcano
2.7 years ago • updated 2.6 years ago
Loren
▴ 10
2
votes
1
reply
4.4k
views
EnhancedVolcano Label Question
RNASeq
EnhancedVolcano
DEGs
updated 2.7 years ago by
Kevin Blighe
★ 3.9k • written 2.7 years ago by
robledoj13
• 0
7
votes
8
replies
6.2k
views
Warning in EnhancedVolcano plot
volcano-plot
EnhancedVolcano
updated 2.8 years ago by
Kevin Blighe
★ 3.9k • written 2.9 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
4
replies
3.7k
views
EnhancedVolcano plot with colCustom
EnhancedVolcano
2.9 years ago
Neeraja Vegesna
▴ 10
1
vote
1
reply
2.0k
views
Enhanced Volcano Plot Controlling Color Layers
EnhancedVolcano
2.9 years ago
dk0319
• 0
6
votes
9
replies
1.9k
views
How to better design a Volcano plot
EnhancedVolcano
updated 3.2 years ago by
Kevin Blighe
★ 3.9k • written 3.2 years ago by
suxxa
▴ 20
1
vote
8
replies
3.2k
views
Problem selectively labelling points in the Enhanced Volcano package
EnhancedVolcano
3.2 years ago
Peter
▴ 10
6
votes
8
replies
3.4k
views
Jitter p-values in volcano plot
EnhancedVolcano
DESeq2
updated 3.4 years ago by
Michael Love
41k • written 3.4 years ago by
philipp.rewe
▴ 20
4
votes
2
replies
2.6k
views
enhancedVolcano: Why are only a few of my select labels showing up?
enha
EnhancedVolcano
3.4 years ago
noahhelton98
▴ 20
3
votes
5
replies
1.9k
views
Volcano plot - select additional gene
EnhancedVolcano
RNASeqR
R
volcanoplot
updated 3.4 years ago by
Kevin Blighe
★ 3.9k • written 3.4 years ago by
camillab.
▴ 10
1
vote
12
replies
1.6k
views
EnhancedVolcano - highlight specific points by changing shape
enhancedvolcano
updated 3.5 years ago by
Kevin Blighe
★ 3.9k • written 3.5 years ago by
n.tear
▴ 20
0
votes
20
replies
3.0k
views
pointSize, labSize, and DrawConnectors error when plotting EnhancedVolcano
EnhancedVolcano
3.6 years ago • updated 3.2 years ago
knholm
• 0
0
votes
1
reply
2.0k
views
Increase text size of axis labels in EnhancedVolcano
EnhancedVolcano
updated 3.6 years ago by
Kevin Blighe
★ 3.9k • written 3.6 years ago by
knholm
• 0
4
votes
7
replies
2.4k
views
visualize significant upregultaed genes and downregultaed genes with different colors (EnhancedVolcano)
enhancedvolcano
updated 3.6 years ago by
Kevin Blighe
★ 3.9k • written 3.6 years ago by
gaom001
▴ 10
0
votes
3
replies
799
views
Enhanced volcanoplots from DESeq2
EnhancedVolcano
updated 4.0 years ago by
Michael Love
41k • written 4.0 years ago by
rimss.khurana
• 0
1
vote
6
replies
21k
views
Log2FC data type error in EnhansedVolcano package
software error
enhancedvolcano
4.4 years ago
sauuyer
▴ 10
0
votes
8
replies
12k
views
How to generate a volcano plot when p-values from DESeq2 are zero?
deseq2
pvalue
visualization
enhancedvolcano
rnaseq
updated 5.1 years ago by
Michael Love
41k • written 5.1 years ago by
ricardo3889
• 0
40 results • Page
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Answer: maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicat
by
snijesh
▴ 20
You can try: using `read.delim` or `fread`. ``` my_maf = data.table::fread("path/to/maf/sample.maf") my_maf = read.maf(maf = my_maf) …
Comment: DEG Filtering
by
Amit
• 0
Hi Gordon, Thank you for your response and advice. I want to analyze Dataset GSE18090 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi) whic…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
Gordon Smyth
50k
Yes, that is a quote from [A guide to creating design matrices for gene expression experiments](https://bioconductor.org/packages/release/w…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
JKim
• 0
Thank you. I think I found why the order matters. > Although an intercept-free design matrix has been coded using the 0+ notation, the in…
Comment: Unable to annotate ExpressionSet object from hugene11st chip
by
Efra
• 0
I did as you told, and after running ```eset.annot <- annotateEset(eset, hugene11sttranscriptcluster.db)``` I got the next output: ``` 'se…
Votes
C: How to check that the reads in two fastq files are in the same order
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
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