Bioconductor Vranges

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966

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somaticsignatures vranges readvcfasvranges

6.6 years ago guillaume.dachy • 0

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2.1k

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variantannotation vcf readvcf vranges

updated 6.8 years ago by Michael Lawrence ★ 11k • written 6.8 years ago by david.mas • 0

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1.5k

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variantannotation VRanges R Rle

updated 6.8 years ago by Valerie Obenchain ★ 6.8k • written 6.8 years ago by Jayendra Shinde • 0

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2.0k

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somaticsignatures somaticsignatures package readvcfasvranges vranges

7.7 years ago • updated 7.6 years ago guillaume.dachy • 0

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1.6k

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vranges vcf to vranges

8.3 years ago Bogdan ▴ 670

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2.2k

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somaticsignatures vranges

updated 8.8 years ago by Julian Gehring ★ 1.3k • written 8.8 years ago by arsala521 ▴ 10

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1.8k

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granges vranges readvcfasvranges somaticsignatures

updated 9.1 years ago by Michael Lawrence ★ 11k • written 9.1 years ago by jpluta26 • 0

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2.5k

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SomaticSignatures mutationContext VRanges

updated 9.6 years ago by Julian Gehring ★ 1.3k • written 9.6 years ago by tesa.severson ▴ 10

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2.7k

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variantannotation vranges readvcf readvcfasvranges metadata

10.2 years ago summerela • 0

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3.6k

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variantannotation granges DNAStringSetList findoverlaps Vranges

10.2 years ago summerela • 0

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Answer: Version conflict when pushing to scQTLtools devel branch by shepherl 4.1k

There is a Bioconductor release today. There were notifications on the bioc-devel mailing list https://stat.ethz.ch/pipermail/bioc-devel…

Comment: DiffBind can't find a DAR by Mengjun • 0

The details about this question: I have 4 samples with 2 conditions( ctrl_1, ctrl_2, ko_1, ko_2), i use these 4 samples as input. Here is …

Comment: DiffBind can't find a DAR by Mengjun • 0

Thank you very much for pointing out this shortcoming. I will improve it.

Comment: samtools loading in R by Charlie • 0

This is obviously a very late answer but I had a similar error: > sh: samtools: command not found > > sh: samtools: command not found > …

Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label by njmcdirect • 0

https://www.www-njmcdirect.run/

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Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA

Answer: GSVA ssGSEA vs. Broad implementation of ssGSEA

GSVA ssGSEA vs. Broad implementation of ssGSEA

Comment: biomaRt server error, and mirrors do not help

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Popular Question to James W. MacDonald 68k