Bioconductor Vranges

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941

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somaticsignatures vranges readvcfasvranges

6.5 years ago guillaume.dachy • 0

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2.1k

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variantannotation vcf readvcf vranges

updated 6.7 years ago by Michael Lawrence ★ 11k • written 6.7 years ago by david.mas • 0

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1.4k

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variantannotation VRanges R Rle

updated 6.7 years ago by Valerie Obenchain ★ 6.8k • written 6.7 years ago by Jayendra Shinde • 0

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2.0k

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somaticsignatures somaticsignatures package readvcfasvranges vranges

7.6 years ago • updated 7.5 years ago guillaume.dachy • 0

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1.6k

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vranges vcf to vranges

8.2 years ago Bogdan ▴ 670

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2.1k

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somaticsignatures vranges

updated 8.7 years ago by Julian Gehring ★ 1.3k • written 8.7 years ago by arsala521 ▴ 10

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1.8k

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granges vranges readvcfasvranges somaticsignatures

updated 9.0 years ago by Michael Lawrence ★ 11k • written 9.0 years ago by jpluta26 • 0

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2.5k

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SomaticSignatures mutationContext VRanges

updated 9.5 years ago by Julian Gehring ★ 1.3k • written 9.5 years ago by tesa.severson ▴ 10

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2.7k

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variantannotation vranges readvcf readvcfasvranges metadata

10.1 years ago summerela • 0

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3.5k

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variantannotation granges DNAStringSetList findoverlaps Vranges

10.1 years ago summerela • 0

10 results • Page 1 of 1

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Comment: Error in retrieving clinical data by silickas • 0

Thank you for the reply. I will try to do that next time. This time instead, I used the GenomicDataCommons package to download clinical dat…

Comment: deseq2 lfc shrinkage with few DEGs by Robert • 0

I'm dealing with a similar situation. I assume the coefficients related to batch effect would need to be included in idx also, is this corr…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Thank you so much!! Yeah I had thought about this too, regarding the fact that DiffBind is a wrapper for counting peaks in this way in R di…

Comment: DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling) by aitor • 0

Hi everyone. I have a RIP-Seq analysis with 3 conditions and 3 assays (IP, IgG and Input for each of them). 4 replicates for each conditio…

Comment: Discrepancy between Excel TPP-TR reported values and the Melt Curve reported val by James W. MacDonald 68k

You will need to provide a self-contained example, or it is unlikely that anybody could debug any possible issue.

Votes

Answer: Limma - Complex 2-way multi-level contrast with paired samples

Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks

Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression

Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf

Answer: Differential expression of proteins using somascan data

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Popular Question to xiaofeiwang198266 • 0

Scholar to shepherl 4.1k

Popular Question to James W. MacDonald 68k