Bioconductor Vranges

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941

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somaticsignatures vranges readvcfasvranges

6.5 years ago guillaume.dachy • 0

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2.1k

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variantannotation vcf readvcf vranges

updated 6.7 years ago by Michael Lawrence ★ 11k • written 6.7 years ago by david.mas • 0

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1.4k

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variantannotation VRanges R Rle

updated 6.7 years ago by Valerie Obenchain ★ 6.8k • written 6.7 years ago by Jayendra Shinde • 0

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2.0k

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somaticsignatures somaticsignatures package readvcfasvranges vranges

7.6 years ago • updated 7.5 years ago guillaume.dachy • 0

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1.6k

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vranges vcf to vranges

8.2 years ago Bogdan ▴ 670

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2.1k

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somaticsignatures vranges

updated 8.7 years ago by Julian Gehring ★ 1.3k • written 8.7 years ago by arsala521 ▴ 10

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1.8k

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granges vranges readvcfasvranges somaticsignatures

updated 9.0 years ago by Michael Lawrence ★ 11k • written 9.0 years ago by jpluta26 • 0

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2.5k

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SomaticSignatures mutationContext VRanges

updated 9.5 years ago by Julian Gehring ★ 1.3k • written 9.5 years ago by tesa.severson ▴ 10

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2.7k

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variantannotation vranges readvcf readvcfasvranges metadata

10.1 years ago summerela • 0

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3.5k

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variantannotation granges DNAStringSetList findoverlaps Vranges

10.1 years ago summerela • 0

10 results • Page 1 of 1

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Comment: error in ChAMP loading file by shocked.tick.zyet • 0

Great troubleshooting steps for ChAMP import issues! "ChAMP methylation data import errors" on [Google Search][1] for similar cases. Header…

Comment: orgDB by jenniferping36 • 0

Thanks for the suggestion! I'll check out the resources.

Comment: sesameDataCache is not work properly on my system by Samreen • 0

Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…

Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k

If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …

Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …

Votes

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

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