Bioconductor Vranges

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somaticsignatures vranges readvcfasvranges

7.4 years ago guillaume.dachy • 0

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2.4k

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variantannotation vcf readvcf vranges

updated 7.6 years ago by Michael Lawrence ★ 11k • written 7.6 years ago by david.mas • 0

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1.7k

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variantannotation VRanges R Rle

updated 7.6 years ago by Valerie Obenchain ★ 6.8k • written 7.6 years ago by Jayendra Shinde • 0

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somaticsignatures somaticsignatures package readvcfasvranges vranges

8.5 years ago • updated 8.4 years ago guillaume.dachy • 0

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1.8k

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vranges vcf to vranges

9.1 years ago Bogdan ▴ 670

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2.4k

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somaticsignatures vranges

updated 9.6 years ago by Julian Gehring ★ 1.3k • written 9.6 years ago by arsala521 ▴ 10

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2.1k

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granges vranges readvcfasvranges somaticsignatures

updated 9.9 years ago by Michael Lawrence ★ 11k • written 9.9 years ago by jpluta26 • 0

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2.9k

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SomaticSignatures mutationContext VRanges

updated 10.4 years ago by Julian Gehring ★ 1.3k • written 10.4 years ago by tesa.severson ▴ 10

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3.1k

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variantannotation vranges readvcf readvcfasvranges metadata

11.0 years ago summerela • 0

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4.4k

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variantannotation granges DNAStringSetList findoverlaps Vranges

11.0 years ago summerela • 0

10 results • Page 1 of 1

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Comment: Error message that there is no package called Biobase by DamionLedner99 • 0

thanks for sharing!!! https://cran.r-project.org/

Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0

Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…

Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k

The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …

Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0

Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …

Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0

Thank you!

Votes

Comment: Are transformed values from rlog /vst log2 normalized counts?

Answer: Are transformed values from rlog /vst log2 normalized counts?

A: DESeq2 normalization vs VST vs rlog

Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline

Answer: Confused about the CPM and TMM normalization in edgeR

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Supporter to fl ▴ 20

Popular Question to James W. MacDonald 68k